JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP17_chr12_131823393_131856771	0/0	c0021	1821	2	0	0	0	0	2	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0022	1812	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0023	1812	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	1/0	c0024	1812	1	0	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0025	1825	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0026	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0027	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0028	1821	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0029	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0030	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0031	1821	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0032	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0033	1821	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0034	1821	1	0	0	0	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0035	1821	1	0	1	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0036	1821	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0037	1821	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0038	1821	1	0	0	0	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0039	1821	1	1	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0040	1821	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0041	1821	1	0	0	0	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0042	1821	1	0	0	1	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP19_chr12_55830433_55847936	0/1	c0001	1527	337	72	65	141	17	41	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0002	1527	49	11	10	23	0	5	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0003	1527	6	4	2	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	1/0	c0004	1527	5	4	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0005	1527	3	0	3	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0006	1527	3	0	3	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0007	1527	2	0	0	2	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0008	1527	2	0	0	2	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0009	1527	2	0	1	0	1	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0010	1527	2	2	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0011	1527	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0012	1527	1	0	0	1	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP19_chr12_55830433_55847936	0/0	c0013	1527	1	1	0	0	0	0	copy fasta	MMP19	chr12	55830433	55847936
MMP1_chr11_102784919_102803160	0/1	c0001	1410	398	80	72	188	14	43	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	1/0	c0002	1410	39	1	7	27	0	3	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0003	1410	22	14	2	3	2	1	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0004	1410	5	0	0	5	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0005	1410	3	0	1	0	2	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0006	1410	2	0	2	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0007	1410	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0008	1410	1	0	0	0	0	1	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0009	1410	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0010	1410	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0011	1410	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0012	1410	1	1	0	0	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP1_chr11_102784919_102803160	0/0	c0013	1410	1	0	0	1	0	0	copy fasta	MMP1	chr11	102784919	102803160
MMP20_chr11_102571832_102630332	0/0	c0001	1452	156	25	32	76	6	17	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	1/1	c0002	1452	136	33	26	52	8	15	copy fasta	MMP20	chr11	102571832	102630332