JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP20_chr11_102571832_102630332	0/0	c0003	1452	106	19	18	61	3	5	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0004	1452	16	2	1	12	0	1	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0005	1452	8	8	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0006	1452	4	4	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0007	1452	3	3	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0008	1452	2	0	1	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0009	1452	2	0	0	2	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0010	1452	1	1	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0011	1452	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0012	1452	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0013	1452	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0015	1452	1	0	0	0	1	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0016	1348	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0017	1452	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0018	1452	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0019	1452	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0020	1452	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0021	1452	1	0	0	1	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP20_chr11_102571832_102630332	0/0	c0022	1452	1	0	1	0	0	0	copy fasta	MMP20	chr11	102571832	102630332
MMP21_chr10_125761453_125780821	0/1	c0001	1710	225	52	34	107	7	24	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	1/0	c0002	1710	125	19	29	57	3	16	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0003	1710	63	11	16	24	6	6	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0004	1710	11	11	0	0	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0005	1710	8	0	0	8	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0006	1710	5	0	0	5	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0007	1710	4	0	2	0	2	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0008	1710	2	0	0	2	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0009	1710	2	0	2	0	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0010	1710	2	1	0	0	0	1	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0011	1710	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0012	1710	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0013	1710	1	0	0	1	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0014	1710	1	0	0	0	0	1	copy fasta	MMP21	chr10	125761453	125780821
MMP21_chr10_125761453_125780821	0/0	c0015	1710	1	0	1	0	0	0	copy fasta	MMP21	chr10	125761453	125780821
MMP23B_chr1_1627173_1639654	1/1	c0001	1173	421	99	68	190	16	46	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0002	1173	5	0	0	5	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0003	1173	2	0	0	0	0	2	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0004	1173	1	1	0	0	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0005	1173	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0006	1173	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP23B_chr1_1627173_1639654	0/0	c0007	1173	1	0	0	1	0	0	copy fasta	MMP23B	chr1	1627173	1639654
MMP24OS_chr20_35271352_35283122	1/1	c0001	216	249	59	58	96	9	25	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0002	228	93	25	12	34	9	13	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0003	222	10	0	0	10	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0004	222	5	4	1	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0005	228	3	3	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0006	198	3	3	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0007	246	2	0	0	0	0	2	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0008	216	2	0	0	2	0	0	copy fasta	MMP24OS	chr20	35271352	35283122