JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP24OS_chr20_35271352_35283122	0/0	c0009	227	1	0	0	1	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0010	234	1	0	1	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0011	234	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0012	222	1	0	0	0	0	1	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0013	210	1	1	0	0	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0014	229	1	0	0	1	0	0	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24OS_chr20_35271352_35283122	0/0	c0015	204	1	0	0	0	0	1	copy fasta	MMP24OS	chr20	35271352	35283122
MMP24_chr20_35221690_35281998	1/0	c0001	1938	144	68	12	40	7	16	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/1	c0002	1929	104	5	30	51	6	11	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0003	1938	48	9	18	13	3	5	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0004	1938	7	7	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0005	1938	3	0	1	0	2	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0006	1938	2	2	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0007	1929	2	0	2	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0008	1938	1	0	0	0	0	1	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0009	1938	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0010	1938	1	0	0	0	0	1	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0011	1938	1	0	1	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0012	1929	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0013	1929	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0014	1929	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0015	1929	1	0	0	1	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0016	1938	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP24_chr20_35221690_35281998	0/0	c0017	1938	1	1	0	0	0	0	copy fasta	MMP24	chr20	35221690	35281998
MMP25_chr16_3041561_3065726	1/1	c0001	1689	253	34	43	142	8	24	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0002	1689	107	14	21	50	8	14	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0003	1689	20	17	3	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0004	1689	14	12	2	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0005	1689	8	0	6	0	1	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0006	1689	7	6	0	0	1	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0007	1689	4	2	2	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0008	1689	3	3	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0009	1689	3	0	0	3	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0010	1689	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0011	1689	2	0	0	2	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0012	1689	2	2	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0013	1689	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0014	1674	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0015	1689	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0016	1689	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0017	1689	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0018	1689	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0019	1689	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0020	1689	1	0	1	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0021	1689	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0022	1689	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0023	1689	1	0	0	0	0	1	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0024	1689	1	0	0	1	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP25_chr16_3041561_3065726	0/0	c0025	1689	1	1	0	0	0	0	copy fasta	MMP25	chr16	3041561	3065726
MMP26_chr11_4699784_4997429	0/0	c0001	786	164	57	40	33	16	18	copy fasta	MMP26	chr11	4699784	4997429