JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP26_chr11_4699784_4997429	0/0	c0002	786	25	15	4	6	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0003	786	8	8	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0004	786	5	5	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0005	786	1	1	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0006	786	1	0	0	1	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0007	786	1	1	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP26_chr11_4699784_4997429	0/0	c0008	786	1	1	0	0	0	0	copy fasta	MMP26	chr11	4699784	4997429
MMP27_chr11_102686487_102710769	0/0	c0001	1542	172	45	32	64	10	21	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0002	1542	87	1	14	64	0	8	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0003	1542	58	5	4	40	3	6	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/1	c0004	1542	44	3	12	23	1	4	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0005	1542	17	9	3	1	1	3	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0006	1542	17	5	1	11	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0007	1542	11	0	3	8	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0008	1542	8	0	2	1	1	4	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0009	1542	7	7	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0010	1542	6	6	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0011	1542	5	0	0	5	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0012	1542	5	5	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	1/0	c0013	1542	3	1	1	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0014	1542	3	3	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0015	1542	3	2	1	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0016	1542	1	0	0	0	0	1	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0017	1542	1	0	1	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0018	1542	1	1	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0019	1542	1	1	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0020	1542	1	1	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0021	1542	1	0	0	0	1	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0022	1542	1	0	0	0	0	1	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0023	1542	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0024	1542	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0025	1542	1	1	0	0	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0026	1542	1	0	0	1	0	0	copy fasta	MMP27	chr11	102686487	102710769
MMP27_chr11_102686487_102710769	0/0	c0027	1542	1	0	0	0	1	0	copy fasta	MMP27	chr11	102686487	102710769
MMP28_chr17_35760865_35800641	0/0	c0001	1563	246	67	41	100	10	28	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0002	1563	24	1	2	20	0	1	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0003	1563	13	13	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0004	1563	6	0	6	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/1	c0005	1563	5	0	3	0	1	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0006	1563	2	0	2	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0007	1563	2	2	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0008	1563	2	0	0	2	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0009	1563	1	0	0	0	1	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0010	1563	1	0	1	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0011	1563	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0014	1563	1	0	0	0	0	1	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0015	1563	1	0	1	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP28_chr17_35760865_35800641	0/0	c0016	1563	1	1	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641