JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD6_chr6_89428152_89638821	0/0	c0028	2184	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0029	2184	1	0	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0030	2184	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD7_chr7_118219704_118247732	1/1	c0001	765	377	89	59	178	13	36	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0002	765	22	1	3	13	1	4	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0003	765	2	2	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0004	803	1	0	1	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0005	765	1	1	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0006	765	1	0	1	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0007	765	1	1	0	0	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD7_chr7_118219704_118247732	0/0	c0008	755	1	0	0	1	0	0	copy fasta	ANKRD7	chr7	118219704	118247732
ANKRD9_chr14_102496767_102514776	1/1	c0001	954	380	87	69	159	18	45	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	c0002	954	2	0	0	2	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	c0003	954	2	0	1	0	0	1	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	c0004	954	1	0	0	1	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKRD9_chr14_102496767_102514776	0/0	c0005	954	1	1	0	0	0	0	copy fasta	ANKRD9	chr14	102496767	102514776
ANKS1A_chr6_34884255_35096406	0/0	c0001	3405	100	10	18	59	3	10	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/1	c0002	3405	68	20	8	35	0	4	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0003	3411	57	8	4	40	2	3	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0004	3405	18	0	0	14	1	3	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0005	3405	18	7	8	1	0	2	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0006	3405	8	0	5	0	0	3	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0007	3405	5	2	0	3	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0008	3405	4	0	0	4	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0009	3405	4	2	0	0	0	2	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0010	3411	4	4	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0011	3405	3	3	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0012	3405	3	1	2	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0013	3405	3	0	1	1	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0014	3405	2	0	2	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0015	3405	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0016	3405	2	2	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0017	3405	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0018	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0019	3405	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0020	3405	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0021	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	1/0	c0022	3405	1	0	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0023	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0024	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0025	3405	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0026	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0027	3405	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0028	3405	1	0	0	0	0	1	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0029	3405	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0030	3405	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0031	3405	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0032	3411	1	1	0	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0033	3411	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1A_chr6_34884255_35096406	0/0	c0034	3405	1	0	0	1	0	0	copy fasta	ANKS1A	chr6	34884255	35096406