JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP28_chr17_35760865_35800641	0/0	c0017	1563	1	1	0	0	0	0	copy fasta	MMP28	chr17	35760865	35800641
MMP2_chr16_55474198_55511691	0/0	c0001	1983	140	40	15	55	5	25	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	1/0	c0002	1983	86	21	13	40	5	6	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0003	1983	62	1	27	22	2	10	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0004	1983	51	3	10	35	3	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0005	1983	40	3	2	28	2	5	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0006	1983	17	0	4	11	0	2	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0007	1983	13	7	0	6	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0008	1983	8	0	6	1	1	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0009	1983	6	2	0	2	0	2	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0010	1983	6	5	1	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0011	1983	5	4	1	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0012	1983	3	3	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0013	1983	3	3	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0014	1983	2	0	0	2	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0015	1983	2	0	0	2	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/1	c0016	1983	1	0	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0017	1983	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0018	1983	1	0	0	1	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0019	1983	1	0	1	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0020	1983	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0021	1983	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0022	1983	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP2_chr16_55474198_55511691	0/0	c0023	1983	1	1	0	0	0	0	copy fasta	MMP2	chr16	55474198	55511691
MMP3_chr11_102830801_102848609	0/0	c0001	1434	247	45	42	133	6	21	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	1/1	c0002	1434	131	26	22	60	6	15	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0003	1434	13	6	3	1	2	1	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0004	1434	8	8	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0005	1434	7	7	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0006	1434	4	0	4	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0007	1434	2	1	0	1	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0008	1434	2	1	1	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0009	1434	1	0	0	0	0	1	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0010	1434	1	0	0	1	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0011	1434	1	0	0	1	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0012	1434	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0013	1434	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0014	1434	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0015	1434	1	1	0	0	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP3_chr11_102830801_102848609	0/0	c0016	1434	1	0	0	1	0	0	copy fasta	MMP3	chr11	102830801	102848609
MMP7_chr11_102515508_102535747	1/0	c0001	804	352	84	65	147	13	42	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/1	c0002	804	68	2	10	45	5	5	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0003	804	29	0	0	28	0	1	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0004	804	4	0	4	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0005	804	4	4	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0006	804	3	3	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0007	804	3	3	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0008	804	2	0	0	2	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0009	804	2	1	1	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0010	804	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747