JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP7_chr11_102515508_102535747	0/0	c0011	804	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0012	804	1	1	0	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0013	804	1	0	1	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0014	804	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0015	804	1	0	0	1	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP7_chr11_102515508_102535747	0/0	c0016	804	1	0	1	0	0	0	copy fasta	MMP7	chr11	102515508	102535747
MMP8_chr11_102706796_102729954	0/0	c0001	1404	236	48	40	112	9	27	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0002	1404	83	1	13	60	1	8	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	1/0	c0003	1404	76	13	23	25	5	9	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0004	1404	7	0	2	1	2	2	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0005	1404	6	6	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0006	1404	6	6	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0007	1404	5	5	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0008	1404	5	5	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0009	1404	5	0	0	5	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0010	1404	4	0	0	4	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0011	1404	3	3	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0012	1404	3	0	3	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0013	1404	2	0	0	2	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0014	1404	2	0	1	0	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0015	1404	2	2	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0016	1404	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0017	1404	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0018	1404	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0019	1404	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0020	1404	1	0	1	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0021	1404	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/1	c0022	1404	1	0	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0023	1404	1	0	0	0	0	1	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0024	1404	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0025	1404	1	0	0	0	1	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0026	1404	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0027	1404	1	0	0	1	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP8_chr11_102706796_102729954	0/0	c0028	1404	1	1	0	0	0	0	copy fasta	MMP8	chr11	102706796	102729954
MMP9_chr20_46003908_46021561	0/0	c0001	2124	81	14	8	38	4	17	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0002	2124	74	8	7	50	4	5	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	1/0	c0003	2124	71	6	18	41	0	5	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0004	2124	65	20	19	0	8	18	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0005	2124	46	2	1	43	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0006	2124	21	0	6	11	2	2	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0007	2124	20	17	3	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0008	2124	18	17	1	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0009	2124	7	0	0	7	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0010	2124	5	0	0	5	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0011	2124	4	1	0	0	0	3	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0012	2124	2	2	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0013	2124	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0014	2124	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0015	2124	1	0	1	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0016	2124	1	1	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561