JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP9_chr20_46003908_46021561	0/1	c0017	2124	1	0	0	0	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMP9_chr20_46003908_46021561	0/0	c0018	2124	1	0	0	1	0	0	copy fasta	MMP9	chr20	46003908	46021561
MMRN1_chr4_89889854_89959614	1/0	c0001	3687	281	63	59	119	12	27	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0002	3687	42	0	1	38	0	3	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0003	3687	6	6	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0004	3687	4	1	3	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0005	3687	3	3	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0006	3687	3	3	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0007	3687	3	3	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0008	3687	2	2	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0009	3687	2	0	0	2	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/1	c0010	3687	2	0	0	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0011	3687	2	1	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0012	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0013	3687	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0014	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0015	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0016	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0017	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0018	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0019	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0020	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0021	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0022	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0023	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0024	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0025	3687	1	0	0	1	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0026	3687	1	0	1	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0027	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0028	3687	1	1	0	0	0	0	copy fasta	MMRN1	chr4	89889854	89959614
MMRN1_chr4_89889854_89959614	0/0	c0029	3687	1	0	0	0	0	1	copy fasta	MMRN1	chr4	89889854	89959614
MMRN2_chr10_86930540_86962615	0/0	c0001	2850	135	15	23	72	6	19	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0002	2850	93	33	20	33	3	4	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0003	2850	64	11	18	14	9	12	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/1	c0004	2850	28	8	6	9	0	4	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0005	2850	14	0	3	11	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0006	2850	8	8	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0007	2850	7	6	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0008	2850	7	7	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0009	2850	3	0	0	3	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0010	2850	3	3	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0011	2850	2	0	0	2	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0012	2850	2	2	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	1/0	c0013	2850	2	0	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0014	2850	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0015	2850	1	0	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0016	2850	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0017	2850	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0018	2850	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0019	2850	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615