JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMRN2_chr10_86930540_86962615	0/0	c0020	2850	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0021	2850	1	0	1	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0022	2850	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0023	2850	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0024	2850	1	0	0	0	0	1	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0025	2850	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0026	2850	1	1	0	0	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMRN2_chr10_86930540_86962615	0/0	c0027	2850	1	0	0	1	0	0	copy fasta	MMRN2	chr10	86930540	86962615
MMS19_chr10_97453324_97503422	0/1	c0001	3093	173	35	35	79	3	20	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0002	3093	109	9	25	65	3	7	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	1/0	c0003	3093	25	8	0	8	3	5	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0004	3093	18	17	0	0	0	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0005	3093	17	9	1	4	2	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0006	3093	11	0	7	4	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0007	3093	5	0	5	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0008	3093	3	3	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0009	3093	1	0	0	0	1	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0010	3093	1	0	0	1	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0011	3093	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0012	3093	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0013	3093	1	0	1	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0014	3093	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0015	3093	1	0	0	0	0	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0016	3093	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0017	3093	1	0	0	0	0	1	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0018	3093	1	1	0	0	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS19_chr10_97453324_97503422	0/0	c0019	3093	1	0	0	1	0	0	copy fasta	MMS19	chr10	97453324	97503422
MMS22L_chr6_97137161_97288216	1/0	c0001	3732	133	20	18	86	0	8	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/1	c0002	3732	102	25	17	46	2	11	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0003	3732	16	13	0	0	0	3	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0004	3732	14	1	8	0	1	4	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0005	3732	7	7	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0006	3732	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0007	3732	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0008	3732	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0009	3732	2	2	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0010	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0011	3732	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0012	3732	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0013	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0014	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0015	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0016	3732	1	0	0	0	1	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0017	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0018	3732	1	1	0	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0019	3732	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0020	3732	1	0	0	1	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMS22L_chr6_97137161_97288216	0/0	c0021	3732	1	0	1	0	0	0	copy fasta	MMS22L	chr6	97137161	97288216
MMUT_chr6_49425360_49468253	1/1	c0001	2253	130	28	24	63	6	7	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0002	2253	102	17	12	50	6	17	copy fasta	MMUT	chr6	49425360	49468253