JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMUT_chr6_49425360_49468253	0/0	c0003	2253	73	32	11	22	0	8	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0004	2253	36	7	5	17	1	6	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0005	2253	9	0	4	5	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0006	2253	8	0	0	8	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0007	2253	4	4	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0008	2253	3	0	1	0	0	2	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0009	2253	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0010	2253	1	1	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0011	2253	1	0	0	0	1	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0012	2253	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0013	2253	1	1	0	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0014	2253	1	0	0	1	0	0	copy fasta	MMUT	chr6	49425360	49468253
MMUT_chr6_49425360_49468253	0/0	c0015	2253	1	0	1	0	0	0	copy fasta	MMUT	chr6	49425360	49468253
MN1_chr22_27743277_27806756	1/1	c0001	3963	286	44	62	133	13	32	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0002	3966	29	1	8	14	4	2	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0003	3966	14	12	2	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0004	3957	12	5	3	4	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0005	3963	10	8	2	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0006	3966	5	5	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0007	3963	5	0	3	0	1	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0008	3963	4	4	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0009	3963	4	4	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0010	3963	3	3	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0011	3960	3	2	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0012	3963	3	0	0	3	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0013	3963	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0014	3963	2	2	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0015	3963	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0016	3963	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0017	3963	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0018	3963	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0019	3963	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0020	3966	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0021	3963	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0022	3966	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0023	3963	1	0	0	1	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0024	3963	1	1	0	0	0	0	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0025	3981	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MN1_chr22_27743277_27806756	0/0	c0026	3963	1	0	0	0	0	1	copy fasta	MN1	chr22	27743277	27806756
MNAT1_chr14_60729761_60974965	1/1	c0001	930	266	69	35	130	4	26	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	c0002	930	4	1	1	0	0	2	copy fasta	MNAT1	chr14	60729761	60974965
MNAT1_chr14_60729761_60974965	0/0	c0003	930	2	2	0	0	0	0	copy fasta	MNAT1	chr14	60729761	60974965
MND1_chr4_153339688_153420118	1/1	c0001	618	314	87	49	130	14	32	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	c0002	618	19	7	5	2	0	5	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	c0003	618	4	4	0	0	0	0	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	c0004	618	4	0	0	4	0	0	copy fasta	MND1	chr4	153339688	153420118
MND1_chr4_153339688_153420118	0/0	c0005	618	1	0	0	0	0	1	copy fasta	MND1	chr4	153339688	153420118
MNDA_chr1_158826351_158854502	0/0	c0001	1224	205	18	32	120	7	28	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	1/1	c0002	1224	190	72	35	63	5	13	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0003	1224	18	0	0	18	0	0	copy fasta	MNDA	chr1	158826351	158854502