JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MNDA_chr1_158826351_158854502	0/0	c0004	1224	5	0	0	5	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0005	1224	3	3	0	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0006	1224	1	0	0	1	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0007	1224	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0008	1224	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0009	1224	1	1	0	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0010	1224	1	0	0	0	0	1	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0011	1224	1	0	1	0	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNDA_chr1_158826351_158854502	0/0	c0012	1224	1	0	0	1	0	0	copy fasta	MNDA	chr1	158826351	158854502
MNS1_chr15_56423724_56470137	1/1	c0001	1488	327	44	58	176	15	32	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0002	1488	39	37	2	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0003	1488	19	0	4	12	1	2	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0004	1488	13	0	10	1	0	2	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0005	1488	7	7	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0006	1488	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0007	1488	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0008	1488	1	0	0	0	0	1	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0009	1488	1	0	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0010	1488	1	0	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0011	1488	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0012	1488	1	0	0	1	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0013	1488	1	1	0	0	0	0	copy fasta	MNS1	chr15	56423724	56470137
MNS1_chr15_56423724_56470137	0/0	c0014	1488	1	0	0	0	0	1	copy fasta	MNS1	chr15	56423724	56470137
MNT_chr17_2379073_2406060	1/1	c0001	1749	344	70	61	159	10	42	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0002	1749	61	17	5	32	4	3	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0003	1749	12	0	10	0	2	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0004	1749	10	4	4	0	0	2	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0005	1749	4	2	0	0	2	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0006	1749	3	0	2	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0007	1749	2	0	0	0	0	2	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0008	1749	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0009	1749	1	0	1	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0011	1749	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0012	1749	1	0	0	1	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0013	1749	1	0	0	0	0	1	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0014	1749	1	1	0	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNT_chr17_2379073_2406060	0/0	c0015	1749	1	0	1	0	0	0	copy fasta	MNT	chr17	2379073	2406060
MNX1_chr7_156999854_157015663	0/1	c0001	1212	263	57	56	109	12	28	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0002	1215	62	16	10	24	0	12	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	1/0	c0003	1206	52	3	7	32	2	7	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0004	1206	39	8	4	26	0	1	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0005	1212	5	5	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0006	1221	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0007	1218	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0008	1218	2	0	0	0	0	2	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0009	1215	2	2	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0011	1212	1	1	0	0	0	0	copy fasta	MNX1	chr7	156999854	157015663
MNX1_chr7_156999854_157015663	0/0	c0012	1212	1	0	1	0	0	0	copy fasta	MNX1	chr7	156999854	157015663