JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOAP1_chr14_93177199_93189897	0/1	c0001	1056	413	85	76	188	18	45	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0002	1056	6	6	0	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0003	1056	5	0	0	5	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0004	1056	4	0	0	4	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0005	1056	3	1	2	0	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0006	1056	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0007	1056	1	0	0	0	0	1	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0008	1056	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOAP1_chr14_93177199_93189897	0/0	c0009	1056	1	0	0	1	0	0	copy fasta	MOAP1	chr14	93177199	93189897
MOB1A_chr2_74147528_74183879	1/1	c0001	651	402	96	74	186	14	30	copy fasta	MOB1A	chr2	74147528	74183879
MOB1B_chr4_70897369_70993168	1/1	c0001	651	282	86	45	111	8	30	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	c0002	651	1	0	1	0	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB1B_chr4_70897369_70993168	0/0	c0003	651	1	0	0	1	0	0	copy fasta	MOB1B	chr4	70897369	70993168
MOB2_chr11_1464457_1491779	0/1	c0001	807	396	90	65	187	14	39	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	1/0	c0002	807	13	0	9	0	0	3	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0003	807	3	0	0	3	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0004	807	2	0	0	2	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0005	807	2	2	0	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0006	807	2	1	1	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0007	807	2	2	0	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0008	807	1	0	0	1	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0009	807	1	0	0	1	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0010	807	1	0	0	1	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0011	807	1	0	0	1	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0012	807	1	1	0	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB2_chr11_1464457_1491779	0/0	c0013	807	1	0	1	0	0	0	copy fasta	MOB2	chr11	1464457	1491779
MOB3A_chr19_2066036_2101326	1/0	c0001	654	227	29	53	113	10	21	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0002	654	76	28	9	23	6	10	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/1	c0003	654	52	19	7	19	0	6	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0004	654	15	0	3	11	0	1	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0005	654	9	0	3	0	0	6	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0006	654	6	6	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0007	654	3	0	3	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0008	654	3	3	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0009	654	2	1	1	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0010	654	2	2	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0011	654	1	1	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0012	654	1	0	1	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0013	654	1	0	0	1	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0014	654	1	1	0	0	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3A_chr19_2066036_2101326	0/0	c0015	654	1	0	0	1	0	0	copy fasta	MOB3A	chr19	2066036	2101326
MOB3B_chr9_27320209_27534814	1/1	c0001	651	293	88	58	97	7	41	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	c0002	651	20	6	8	0	3	3	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	c0003	651	5	0	0	5	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	c0004	651	1	1	0	0	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3B_chr9_27320209_27534814	0/0	c0005	651	1	1	0	0	0	0	copy fasta	MOB3B	chr9	27320209	27534814
MOB3C_chr1_46602719_46621811	0/1	c0001	651	322	44	42	193	6	36	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	1/0	c0002	651	100	45	26	15	6	7	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	c0003	651	2	2	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB3C_chr1_46602719_46621811	0/0	c0004	651	1	0	0	0	0	1	copy fasta	MOB3C	chr1	46602719	46621811