JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOB3C_chr1_46602719_46621811	0/0	c0005	651	1	1	0	0	0	0	copy fasta	MOB3C	chr1	46602719	46621811
MOB4_chr2_197511066_197558699	1/1	c0001	678	360	82	78	156	12	30	copy fasta	MOB4	chr2	197511066	197558699
MOBP_chr3_39462680_39508027	1/1	c0001	552	394	96	64	178	14	40	copy fasta	MOBP	chr3	39462680	39508027
MOBP_chr3_39462680_39508027	0/0	c0002	552	6	0	0	6	0	0	copy fasta	MOBP	chr3	39462680	39508027
MOCOS_chr18_36182497_36277157	0/0	c0001	2667	168	46	27	81	6	8	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0002	2667	68	5	15	33	4	11	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0003	2667	27	0	1	17	0	9	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/1	c0004	2667	14	2	8	2	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0005	2667	12	11	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0006	2667	6	3	1	0	2	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0007	2667	6	1	0	4	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0008	2667	5	0	3	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0009	2667	4	4	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0010	2667	4	3	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0011	2667	3	0	1	1	1	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0012	2667	3	0	1	0	0	2	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0013	2667	3	0	0	2	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0014	2667	3	3	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0015	2667	2	0	2	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0016	2667	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0017	2667	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0018	2667	2	0	0	2	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0019	2667	2	1	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0020	2667	2	0	0	1	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0021	2667	2	2	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	1/0	c0022	2667	2	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0023	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0024	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0025	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0026	2667	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0027	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0028	2667	1	0	1	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0029	2667	1	0	0	0	0	1	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0030	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0031	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0032	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0033	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0034	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0035	2667	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0036	2667	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0037	2667	1	1	0	0	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCOS_chr18_36182497_36277157	0/0	c0038	2667	1	0	0	1	0	0	copy fasta	MOCOS	chr18	36182497	36277157
MOCS1_chr6_39899170_39939462	1/1	c0001	1911	195	60	34	62	9	28	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0002	1911	42	14	5	22	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0003	1911	13	1	0	11	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0004	1911	4	0	2	0	1	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0005	1911	3	3	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0006	1911	2	0	1	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0007	1911	2	0	0	2	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0008	1911	2	2	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462