JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOCS1_chr6_39899170_39939462	0/0	c0009	1911	2	0	0	2	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0010	1911	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0011	1911	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0012	1911	1	0	0	0	1	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0013	1911	1	0	0	0	0	1	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0014	1911	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0015	1911	1	1	0	0	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS1_chr6_39899170_39939462	0/0	c0016	1911	1	0	0	1	0	0	copy fasta	MOCS1	chr6	39899170	39939462
MOCS2_chr5_53090679_53114757	1/1	c0001	567	388	82	75	171	16	42	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0002	567	26	4	5	17	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0003	567	5	0	0	5	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0004	567	3	3	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0005	567	2	2	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0006	567	1	1	0	0	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS2_chr5_53090679_53114757	0/0	c0007	567	1	0	0	1	0	0	copy fasta	MOCS2	chr5	53090679	53114757
MOCS3_chr20_50953818_50968929	1/1	c0001	1383	404	90	73	183	14	42	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0002	1383	18	0	0	18	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0003	1383	2	0	0	2	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0004	1383	2	0	1	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0005	1383	2	2	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0006	1383	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0007	1383	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0008	1383	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0009	1383	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0010	1383	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0011	1383	1	0	0	0	0	1	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0012	1383	1	0	0	1	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOCS3_chr20_50953818_50968929	0/0	c0013	1383	1	1	0	0	0	0	copy fasta	MOCS3	chr20	50953818	50968929
MOGAT1_chr2_222666658_222714930	1/0	c0001	1008	223	49	37	103	11	22	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0002	1008	60	28	14	12	1	5	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0003	1008	14	9	3	1	0	1	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0004	1008	8	1	3	0	0	4	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0005	1008	4	4	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0006	1008	3	2	1	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0007	1008	1	0	0	0	0	1	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/1	c0009	1008	1	0	0	0	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0010	1008	1	0	0	1	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0011	1008	1	0	0	0	0	1	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT1_chr2_222666658_222714930	0/0	c0012	1008	1	0	0	1	0	0	copy fasta	MOGAT1	chr2	222666658	222714930
MOGAT2_chr11_75712838_75737953	1/0	c0001	1005	257	34	42	152	5	23	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/1	c0002	1005	104	24	28	29	5	17	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0003	1005	13	13	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0004	1005	11	11	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0005	1005	10	1	1	8	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0006	1005	7	5	0	2	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0007	1005	2	2	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0008	1005	2	0	0	2	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0009	1005	1	0	1	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0010	1005	1	0	0	0	0	1	copy fasta	MOGAT2	chr11	75712838	75737953