JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOGAT2_chr11_75712838_75737953	0/0	c0011	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0012	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0013	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0014	1005	1	0	0	0	0	1	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0015	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0016	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0017	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0018	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0019	1005	1	1	0	0	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT2_chr11_75712838_75737953	0/0	c0020	1005	1	0	0	1	0	0	copy fasta	MOGAT2	chr11	75712838	75737953
MOGAT3_chr7_101190007_101206036	1/1	c0001	1026	425	93	65	199	18	48	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0002	1026	5	5	0	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0003	1026	2	0	2	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0004	1026	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0005	1026	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0006	1026	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0007	1026	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0008	1026	1	0	1	0	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGAT3_chr7_101190007_101206036	0/0	c0009	1026	1	0	0	1	0	0	copy fasta	MOGAT3	chr7	101190007	101206036
MOGS_chr2_74456057_74470382	0/1	c0001	2514	209	69	27	99	2	11	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	1/0	c0002	2514	123	15	39	36	9	23	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0003	2514	6	0	5	0	1	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0004	2514	5	4	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0005	2514	2	0	0	2	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0006	2514	2	0	0	0	1	1	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0007	2514	2	1	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0008	2514	2	2	0	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0009	2514	1	0	0	0	1	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0010	2514	1	1	0	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0011	2514	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0012	2514	1	0	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0013	2514	1	0	0	0	0	1	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0014	2514	1	0	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0015	2514	1	0	1	0	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0016	2514	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0017	2514	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0018	2514	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOGS_chr2_74456057_74470382	0/0	c0019	2514	1	0	0	1	0	0	copy fasta	MOGS	chr2	74456057	74470382
MOG_chr6_29652092_29677365	0/1	c0001	744	291	55	44	145	10	36	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0002	744	78	14	13	48	1	2	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0003	741	29	19	5	3	1	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0004	744	17	4	9	3	1	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0005	744	14	0	6	0	0	8	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0006	744	3	0	3	0	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0007	744	2	0	1	0	1	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0008	744	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0009	744	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0010	744	1	0	0	1	0	0	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0011	744	1	0	0	0	0	1	copy fasta	MOG	chr6	29652092	29677365
MOG_chr6_29652092_29677365	0/0	c0012	744	1	0	1	0	0	0	copy fasta	MOG	chr6	29652092	29677365