JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKS1A_chr6_34884255_35096406	0/0	c0035	3405	1	0	1	0	0	0	copy fasta	ANKS1A	chr6	34884255	35096406
ANKS1B_chr12_98738974_99989936	1/0	c0001	3858	20	15	2	0	0	2	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0002	3858	8	5	1	0	0	2	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0003	3858	7	6	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0004	3858	4	2	2	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0005	3858	2	2	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0006	3858	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0007	3858	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0008	3858	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0009	3858	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0010	3858	1	0	1	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/1	c0011	3858	1	0	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS1B_chr12_98738974_99989936	0/0	c0012	3858	1	1	0	0	0	0	copy fasta	ANKS1B	chr12	98738974	99989936
ANKS3_chr16_4691511_4739271	1/1	c0001	1971	157	55	19	56	5	20	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0002	1971	142	4	38	81	9	10	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0003	1971	17	17	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0004	1971	14	4	3	5	0	2	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0005	1971	7	1	4	1	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0006	1971	7	1	0	4	1	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0007	1971	4	0	0	2	0	2	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0008	1971	3	0	2	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0009	1971	2	0	1	0	1	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0010	1971	2	2	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0011	1971	2	0	0	2	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0012	1971	2	0	0	2	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0013	1971	2	0	2	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0014	1971	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0015	1971	1	0	1	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0016	1971	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0017	1971	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0018	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0019	1971	1	1	0	0	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0020	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0021	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0022	1971	1	0	0	0	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0023	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0024	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0025	1971	1	0	0	1	0	0	copy fasta	ANKS3	chr16	4691511	4739271
ANKS3_chr16_4691511_4739271	0/0	c0026	1971	1	0	0	0	0	1	copy fasta	ANKS3	chr16	4691511	4739271
ANKS4B_chr16_21228699_21258850	1/1	c0001	1254	401	70	70	199	12	48	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0002	1254	8	8	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0003	1254	4	0	1	1	1	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0004	1254	3	0	3	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0005	1254	2	0	2	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0006	1254	2	2	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0008	1254	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0009	1254	1	0	0	0	1	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0010	1254	1	0	0	0	0	1	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS4B_chr16_21228699_21258850	0/0	c0011	1254	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850