JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOK_chr14_102223836_102310164	1/1	c0001	1260	153	34	38	53	8	18	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0002	1260	21	7	5	6	0	3	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0003	1260	18	15	3	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0004	1260	17	10	2	5	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0005	1260	17	0	2	14	0	1	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0006	1260	16	2	4	0	4	6	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0007	1260	2	2	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0011	1260	1	0	0	1	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0012	1260	1	0	0	1	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0013	1260	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0014	1280	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MOK_chr14_102223836_102310164	0/0	c0015	1260	1	1	0	0	0	0	copy fasta	MOK	chr14	102223836	102310164
MON1A_chr3_49903873_49934811	1/0	c0001	1668	143	43	27	41	7	24	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/1	c0002	1668	81	14	26	29	4	7	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	c0003	1668	17	10	3	2	1	1	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	c0004	1668	15	15	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	c0005	1668	3	3	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	c0006	1668	2	0	0	2	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1A_chr3_49903873_49934811	0/0	c0007	1668	1	1	0	0	0	0	copy fasta	MON1A	chr3	49903873	49934811
MON1B_chr16_77186190_77207398	0/1	c0001	1644	263	78	43	106	6	29	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0002	1644	77	5	22	38	6	6	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0003	1644	73	0	8	57	2	6	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	1/0	c0004	1644	8	7	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0005	1644	8	0	0	8	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0006	1644	4	0	0	1	0	3	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0007	1644	2	2	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0008	1644	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0009	1644	1	1	0	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0010	1644	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0011	1644	1	0	1	0	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON1B_chr16_77186190_77207398	0/0	c0012	1644	1	0	0	1	0	0	copy fasta	MON1B	chr16	77186190	77207398
MON2_chr12_62461826_62605476	0/0	c0001	5154	117	28	13	57	6	13	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	1/0	c0002	5154	78	19	19	28	3	8	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/1	c0003	5154	69	11	9	41	1	6	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0004	5154	33	2	8	18	3	2	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0005	5154	24	2	13	3	1	5	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0006	5154	24	23	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0007	5154	4	0	0	4	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0008	5154	4	1	0	3	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0009	5154	2	2	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0010	5154	2	0	0	0	2	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0011	5154	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0012	5154	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0013	5154	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0014	5154	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0015	5154	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0016	5154	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476