JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MON2_chr12_62461826_62605476	0/0	c0017	5154	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0018	5154	1	1	0	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0019	5154	1	0	0	0	0	1	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0020	5154	1	0	1	0	0	0	copy fasta	MON2	chr12	62461826	62605476
MON2_chr12_62461826_62605476	0/0	c0021	5154	1	0	0	1	0	0	copy fasta	MON2	chr12	62461826	62605476
MORC1_chr3_108953248_109123134	0/0	c0001	2955	78	15	27	21	4	11	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0002	2955	50	11	13	12	1	13	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0003	2955	50	1	15	25	1	8	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	1/0	c0004	2955	44	36	6	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0005	2955	38	14	8	9	2	5	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0006	2955	9	4	4	0	1	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0007	2955	7	7	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0008	2955	4	4	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/1	c0009	2955	3	0	2	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0010	2955	3	0	0	0	1	2	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0011	2955	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0012	2955	1	0	0	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0013	2955	1	0	0	0	0	1	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0014	2955	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0015	2955	1	0	1	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0016	2955	1	0	0	1	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0017	2955	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC1_chr3_108953248_109123134	0/0	c0018	2955	1	1	0	0	0	0	copy fasta	MORC1	chr3	108953248	109123134
MORC2_chr22_30920130_30973774	1/0	c0001	3099	162	22	32	72	11	24	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/1	c0002	3099	143	20	32	71	6	13	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0003	3099	39	29	2	8	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0004	3099	9	9	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0005	3099	5	0	0	5	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0006	3099	4	0	2	1	0	1	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0007	3099	3	0	2	0	1	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0008	3099	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0009	3099	1	1	0	0	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0010	3099	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0011	3099	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC2_chr22_30920130_30973774	0/0	c0012	3099	1	0	0	1	0	0	copy fasta	MORC2	chr22	30920130	30973774
MORC3_chr21_36315197_36381632	1/1	c0001	2820	194	71	47	42	8	24	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0002	2820	64	2	19	33	1	9	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0003	2820	18	0	5	7	1	5	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0004	2820	12	8	4	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0005	2820	10	2	6	0	0	2	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0006	2820	2	0	0	2	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0007	2820	1	1	0	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0008	2820	1	1	0	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0009	2820	1	0	1	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0010	2820	1	0	0	1	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0011	2820	1	0	0	0	0	1	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0012	2820	1	1	0	0	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0013	2820	1	0	0	0	0	1	copy fasta	MORC3	chr21	36315197	36381632
MORC3_chr21_36315197_36381632	0/0	c0014	2820	1	0	0	1	0	0	copy fasta	MORC3	chr21	36315197	36381632
MORC4_chrX_106935738_107005212	0/0	c0001	2814	185	56	28	82	2	17	copy fasta	MORC4	chrX	106935738	107005212