JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MORC4_chrX_106935738_107005212	1/1	c0002	2814	42	5	15	6	3	11	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0003	2814	3	0	3	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0004	2814	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0005	2814	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0006	2814	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0007	2814	1	1	0	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0008	2814	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0009	2814	1	0	0	1	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORC4_chrX_106935738_107005212	0/0	c0010	2814	1	0	1	0	0	0	copy fasta	MORC4	chrX	106935738	107005212
MORF4L1_chr15_78867890_78903139	1/1	c0001	972	328	80	60	137	10	39	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0002	972	79	7	12	55	0	5	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0003	972	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0004	972	1	0	0	1	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0005	972	1	0	1	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0006	972	1	0	1	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L1_chr15_78867890_78903139	0/0	c0007	972	1	1	0	0	0	0	copy fasta	MORF4L1	chr15	78867890	78903139
MORF4L2_chrX_103670498_103691699	1/1	c0001	867	310	73	55	139	9	32	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	c0002	865	1	0	0	1	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORF4L2_chrX_103670498_103691699	0/0	c0003	867	1	1	0	0	0	0	copy fasta	MORF4L2	chrX	103670498	103691699
MORN1_chr1_2316253_2396554	1/1	c0001	1494	75	22	15	19	6	11	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	c0002	1494	2	1	1	0	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	c0003	1494	1	0	0	1	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	c0004	1494	1	1	0	0	0	0	copy fasta	MORN1	chr1	2316253	2396554
MORN1_chr1_2316253_2396554	0/0	c0005	1494	1	0	0	0	0	1	copy fasta	MORN1	chr1	2316253	2396554
MORN2_chr2_38870976_38887709	1/1	c0001	456	353	63	64	176	13	35	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0002	456	21	7	1	13	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0003	456	17	0	8	0	1	8	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0004	456	16	13	2	0	0	1	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0005	456	7	7	0	0	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0006	456	1	0	0	1	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN2_chr2_38870976_38887709	0/0	c0007	456	1	0	1	0	0	0	copy fasta	MORN2	chr2	38870976	38887709
MORN3_chr12_121643742_121674654	1/1	c0001	723	329	87	60	135	11	34	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0002	723	36	1	0	34	1	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0003	723	6	1	5	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0004	723	4	4	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0005	723	2	2	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0006	723	2	0	0	2	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0007	723	1	0	0	0	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0008	723	1	0	1	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0009	723	1	1	0	0	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0010	723	1	0	0	0	0	1	copy fasta	MORN3	chr12	121643742	121674654
MORN3_chr12_121643742_121674654	0/0	c0011	723	1	0	0	1	0	0	copy fasta	MORN3	chr12	121643742	121674654
MORN4_chr10_97609555_97638500	1/1	c0001	441	267	35	50	132	12	36	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	c0002	441	134	48	23	49	4	10	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	c0003	441	14	13	0	1	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN4_chr10_97609555_97638500	0/0	c0004	441	3	0	3	0	0	0	copy fasta	MORN4	chr10	97609555	97638500
MORN5_chr9_122154908_122205083	1/1	c0001	486	347	65	66	162	13	39	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	c0002	486	19	12	3	0	0	4	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	c0003	486	16	15	1	0	0	0	copy fasta	MORN5	chr9	122154908	122205083
MORN5_chr9_122154908_122205083	0/0	c0004	486	3	0	0	0	2	1	copy fasta	MORN5	chr9	122154908	122205083