JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MORN5_chr9_122154908_122205083	0/0	c0005	486	3	0	2	0	1	0	copy fasta	MORN5	chr9	122154908	122205083
MOSMO_chr16_22003111_22089654	1/1	c0001	504	303	74	46	147	6	28	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	c0002	504	2	2	0	0	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSMO_chr16_22003111_22089654	0/0	c0003	504	1	0	0	1	0	0	copy fasta	MOSMO	chr16	22003111	22089654
MOSPD1_chrX_134882632_134920257	1/1	c0001	642	284	74	51	120	9	28	copy fasta	MOSPD1	chrX	134882632	134920257
MOSPD2_chrX_14868421_14927327	1/1	c0001	1557	260	77	52	101	5	23	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	c0002	1557	4	0	1	0	2	1	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	c0003	1557	3	0	3	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD2_chrX_14868421_14927327	0/0	c0004	1557	1	1	0	0	0	0	copy fasta	MOSPD2	chrX	14868421	14927327
MOSPD3_chr7_100607540_100620377	1/1	c0001	708	337	87	61	130	12	45	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	c0002	708	6	6	0	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	c0003	708	2	0	2	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	c0004	708	1	1	0	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	c0005	708	1	0	1	0	0	0	copy fasta	MOSPD3	chr7	100607540	100620377
MOSPD3_chr7_100607540_100620377	0/0	c0006	708	1	0	0	0	0	1	copy fasta	MOSPD3	chr7	100607540	100620377
MOS_chr8_56107942_56118982	1/0	c0001	1041	371	84	63	167	16	40	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/1	c0002	1041	21	1	13	0	2	4	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	c0003	1041	9	4	0	5	0	0	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	c0004	1041	1	1	0	0	0	0	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	c0005	1041	1	0	1	0	0	0	copy fasta	MOS	chr8	56107942	56118982
MOS_chr8_56107942_56118982	0/0	c0006	1041	1	0	1	0	0	0	copy fasta	MOS	chr8	56107942	56118982
MOV10L1_chr22_50085006_50166687	0/1	c0001	3636	131	53	15	50	3	9	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0002	3636	41	3	10	23	0	5	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0003	3636	36	2	9	19	2	4	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0004	3636	29	0	0	26	0	3	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0005	3636	27	4	5	11	1	6	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0006	3636	20	1	1	16	2	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0007	3636	18	2	9	1	4	2	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0008	3636	17	1	5	4	2	5	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0009	3636	9	0	1	8	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0010	3636	9	9	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0011	3636	8	7	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0012	3636	8	1	2	0	1	4	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0013	3636	5	0	0	4	0	1	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0014	3636	4	1	1	0	0	2	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0015	3636	3	0	2	0	1	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	1/0	c0016	3636	2	0	0	0	0	1	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0017	3636	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0018	3636	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0019	3636	2	2	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0020	3636	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0021	3636	2	0	1	0	1	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0022	3636	2	0	2	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0023	3636	2	2	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0024	3636	2	0	0	2	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0025	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0026	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0027	3636	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0028	3636	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0029	3636	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687