JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MOV10L1_chr22_50085006_50166687	0/0	c0030	3636	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0031	3636	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0032	3636	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0033	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0034	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0035	3636	1	1	0	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0036	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0037	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0038	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0039	3636	1	0	0	0	1	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0040	3636	1	0	0	1	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10L1_chr22_50085006_50166687	0/0	c0041	3636	1	0	1	0	0	0	copy fasta	MOV10L1	chr22	50085006	50166687
MOV10_chr1_112669659_112705739	1/1	c0001	3012	221	64	47	73	12	23	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0002	3012	102	5	22	62	4	9	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0003	3012	39	9	1	27	0	2	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0004	3012	19	0	0	19	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0005	3012	8	8	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0006	3012	2	2	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0007	3012	1	1	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0008	3012	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0009	3012	1	1	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0010	3012	1	1	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0011	3012	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0012	3012	1	1	0	0	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0013	3012	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0014	3012	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOV10_chr1_112669659_112705739	0/0	c0015	3012	1	0	0	1	0	0	copy fasta	MOV10	chr1	112669659	112705739
MOXD1_chr6_132291055_132406475	1/1	c0001	1842	293	84	40	136	8	23	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0002	1842	19	5	4	0	4	6	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0003	1842	1	0	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0004	1842	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0005	1842	1	0	1	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0006	1842	1	0	0	0	0	1	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0007	1842	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MOXD1_chr6_132291055_132406475	0/0	c0008	1842	1	1	0	0	0	0	copy fasta	MOXD1	chr6	132291055	132406475
MPC1L_chrX_40618428_40629136	1/1	c0001	411	323	74	62	149	11	25	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	c0002	411	2	0	0	2	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	c0003	411	2	2	0	0	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	c0004	412	1	0	0	1	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	c0005	411	1	0	0	0	0	1	copy fasta	MPC1L	chrX	40618428	40629136
MPC1L_chrX_40618428_40629136	0/0	c0006	411	1	0	0	1	0	0	copy fasta	MPC1L	chrX	40618428	40629136
MPC1_chr6_166359919_166387940	1/1	c0001	330	316	94	63	115	14	28	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	c0002	330	7	0	3	0	2	2	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	c0003	330	4	0	4	0	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	c0004	330	2	2	0	0	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC1_chr6_166359919_166387940	0/0	c0005	330	1	0	0	1	0	0	copy fasta	MPC1	chr6	166359919	166387940
MPC2_chr1_167911675_167942072	1/1	c0001	384	191	30	24	101	11	23	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	c0002	384	134	64	29	29	5	7	copy fasta	MPC2	chr1	167911675	167942072
MPC2_chr1_167911675_167942072	0/0	c0003	384	15	0	1	12	0	2	copy fasta	MPC2	chr1	167911675	167942072
MPDU1_chr17_7578852_7593212	1/1	c0001	744	334	66	71	148	16	31	copy fasta	MPDU1	chr17	7578852	7593212