JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPDU1_chr17_7578852_7593212	0/0	c0002	744	55	10	8	29	2	6	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	c0003	744	13	12	1	0	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	c0004	744	7	0	0	7	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	c0005	744	2	2	0	0	0	0	copy fasta	MPDU1	chr17	7578852	7593212
MPDU1_chr17_7578852_7593212	0/0	c0006	744	1	0	0	0	0	1	copy fasta	MPDU1	chr17	7578852	7593212
MPDZ_chr9_13100707_13284692	1/1	c0001	6213	105	3	21	61	5	13	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0002	6213	82	19	10	42	1	10	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0003	6213	21	12	0	4	2	3	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0004	6213	12	2	6	0	2	2	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0005	6213	8	3	1	2	0	2	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0006	6213	8	8	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0007	6213	7	0	0	7	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0008	6213	6	0	0	6	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0009	6213	4	0	0	0	0	4	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0010	6213	4	4	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0011	6213	3	3	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0012	6213	3	3	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0013	6213	3	3	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0014	6213	2	2	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0015	6213	2	2	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0016	6213	2	2	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0017	6213	2	0	1	0	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0018	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0019	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0020	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0021	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0022	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0023	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0024	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0025	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0026	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0027	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0028	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0029	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0030	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0031	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0032	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0033	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0034	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0035	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0036	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0037	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0038	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0039	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0040	6213	1	0	1	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0041	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0042	6213	1	0	0	0	0	1	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0043	6213	1	0	0	1	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0044	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692
MPDZ_chr9_13100707_13284692	0/0	c0045	6213	1	1	0	0	0	0	copy fasta	MPDZ	chr9	13100707	13284692