JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPEG1_chr11_59203510_59217927	1/0	c0001	2151	204	69	32	78	9	15	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/1	c0002	2151	107	8	26	58	2	12	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0003	2151	51	1	2	41	3	4	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0004	2151	12	0	1	10	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0005	2151	9	0	0	9	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0006	2151	6	0	0	6	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0007	2151	5	5	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0008	2151	5	3	0	0	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0009	2151	4	0	0	2	0	2	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0010	2151	4	0	0	0	0	4	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0011	2151	2	2	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0012	2151	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0013	2151	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0014	2151	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0015	2151	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0016	2151	1	0	0	0	0	1	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0017	2151	1	1	0	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0018	2151	1	0	1	0	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0019	2151	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPEG1_chr11_59203510_59217927	0/0	c0020	2151	1	0	0	1	0	0	copy fasta	MPEG1	chr11	59203510	59217927
MPG_chr16_73225_90846	1/1	c0001	882	337	37	71	174	16	37	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0002	882	92	57	10	19	0	6	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0003	882	3	2	1	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0004	882	1	0	0	0	0	1	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0005	882	1	0	1	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0006	882	1	0	0	0	0	1	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0007	882	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0008	882	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0009	882	1	1	0	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0010	882	1	0	0	1	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0011	882	1	0	1	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0012	882	1	1	0	0	0	0	copy fasta	MPG	chr16	73225	90846
MPG_chr16_73225_90846	0/0	c0013	882	1	0	0	0	0	1	copy fasta	MPG	chr16	73225	90846
MPHOSPH10_chr2_71125634_71155101	0/0	c0001	2046	122	11	30	56	5	20	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	1/1	c0002	2046	95	33	24	13	7	16	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0003	2046	80	0	7	68	0	5	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0004	2046	75	15	14	39	2	5	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0005	2046	16	15	1	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0006	2046	11	11	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0007	2046	9	5	1	2	0	1	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0008	2046	4	0	0	4	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0009	2046	3	0	0	3	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0010	2046	3	3	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0011	2046	3	0	0	2	0	1	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0012	2046	2	0	0	2	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0013	2046	2	0	2	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0014	2046	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0015	2046	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0016	2046	1	1	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0017	2046	1	0	1	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101