JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPHOSPH10_chr2_71125634_71155101	0/0	c0018	2046	1	1	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0019	2046	1	1	0	0	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH10_chr2_71125634_71155101	0/0	c0020	2046	1	0	0	1	0	0	copy fasta	MPHOSPH10	chr2	71125634	71155101
MPHOSPH6_chr16_82143162_82175224	0/0	c0001	483	144	23	21	71	8	21	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0002	483	98	52	8	32	0	6	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0003	483	95	3	24	60	3	5	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	1/1	c0004	483	60	5	9	32	5	7	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0005	483	18	0	1	11	0	6	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0006	483	13	13	0	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0007	483	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0008	483	1	1	0	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0009	483	1	0	0	0	0	1	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0010	483	1	0	1	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0011	483	1	1	0	0	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH6_chr16_82143162_82175224	0/0	c0012	483	1	0	0	1	0	0	copy fasta	MPHOSPH6	chr16	82143162	82175224
MPHOSPH8_chr13_19628659_19678441	1/1	c0001	2583	224	66	43	72	11	30	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0002	2583	37	16	5	11	2	3	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0003	2583	5	0	2	0	3	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0004	2583	4	3	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0005	2583	3	0	0	3	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0006	2583	2	0	1	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0007	2583	2	1	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0008	2583	2	1	1	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0009	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0010	2583	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0011	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0012	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0013	2583	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0014	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0015	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0016	2583	1	0	0	1	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0017	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0018	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0019	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0020	2583	1	0	0	0	0	1	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH8_chr13_19628659_19678441	0/0	c0021	2583	1	1	0	0	0	0	copy fasta	MPHOSPH8	chr13	19628659	19678441
MPHOSPH9_chr12_123149215_123238141	1/1	c0001	3552	96	58	18	4	2	12	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0002	3552	83	1	23	42	0	17	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0003	3552	46	2	5	35	0	4	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0004	3552	19	2	7	4	3	3	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0005	3552	4	0	0	4	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0006	3552	3	0	0	3	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0007	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0008	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0009	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0010	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0011	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0012	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0013	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0014	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141