JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPHOSPH9_chr12_123149215_123238141	0/0	c0015	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0016	3552	1	0	1	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0017	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0018	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0019	3552	1	0	0	0	1	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0020	3552	1	1	0	0	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPHOSPH9_chr12_123149215_123238141	0/0	c0021	3552	1	0	0	1	0	0	copy fasta	MPHOSPH9	chr12	123149215	123238141
MPIG6B_chr6_31718373_31731714	0/1	c0001	726	299	39	63	151	12	33	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0002	726	45	23	9	4	3	6	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0003	726	23	11	10	0	2	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0004	726	17	11	1	5	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0005	726	4	0	1	2	1	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0006	726	1	1	0	0	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0007	726	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0008	726	1	0	0	0	0	1	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0009	726	1	1	0	0	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPIG6B_chr6_31718373_31731714	0/0	c0010	726	1	0	0	1	0	0	copy fasta	MPIG6B	chr6	31718373	31731714
MPI_chr15_74885042_74907219	1/0	c0001	1272	283	65	30	143	8	36	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/1	c0002	1272	101	15	33	40	6	6	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0003	1272	19	0	3	15	0	1	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0004	1272	10	0	4	1	0	5	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0005	1272	5	0	0	5	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0006	1272	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0007	1272	1	1	0	0	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPI_chr15_74885042_74907219	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	MPI	chr15	74885042	74907219
MPLKIP_chr7_40121027_40139622	1/1	c0001	540	390	90	80	168	16	34	copy fasta	MPLKIP	chr7	40121027	40139622
MPL_chr1_43332818_43359466	1/1	c0001	1908	270	71	55	99	11	32	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0002	1908	18	12	3	1	0	2	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0003	1908	6	5	1	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0004	1908	4	4	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0005	1908	3	0	1	0	1	1	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0006	1908	2	2	0	0	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0007	1908	2	0	0	2	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0008	1908	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0009	1908	1	0	0	0	0	1	copy fasta	MPL	chr1	43332818	43359466
MPL_chr1_43332818_43359466	0/0	c0010	1908	1	0	0	1	0	0	copy fasta	MPL	chr1	43332818	43359466
MPND_chr19_4338562_4365078	0/0	c0001	1506	262	46	55	123	9	29	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0002	1506	126	35	22	45	8	16	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0003	1506	5	2	3	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0004	1506	5	1	0	4	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0005	1506	4	4	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0006	1506	4	3	1	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0007	1506	2	2	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0008	1506	2	0	0	0	1	1	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0009	1506	2	2	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0010	1506	1	1	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0011	1506	1	1	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0013	1506	1	0	0	0	0	1	copy fasta	MPND	chr19	4338562	4365078