JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPND_chr19_4338562_4365078	0/0	c0014	1506	1	0	1	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0015	1506	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0016	1506	1	1	0	0	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0017	1506	1	0	0	0	0	1	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0018	1524	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPND_chr19_4338562_4365078	0/0	c0019	1506	1	0	0	1	0	0	copy fasta	MPND	chr19	4338562	4365078
MPO_chr17_58264855_58285935	1/1	c0001	2238	277	73	57	110	11	24	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0002	2238	47	5	3	31	4	4	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0003	2238	8	7	1	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0004	2238	5	2	2	0	0	1	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0005	2238	4	4	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0006	2238	2	0	2	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0007	2238	2	0	0	0	0	2	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0008	2238	2	0	2	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0009	2238	2	2	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0010	2238	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0011	2238	1	0	0	0	0	1	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0012	2238	1	0	1	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0013	2224	1	0	0	0	1	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0014	2238	1	0	0	1	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0015	2238	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPO_chr17_58264855_58285935	0/0	c0016	2238	1	1	0	0	0	0	copy fasta	MPO	chr17	58264855	58285935
MPP1_chrX_154773684_154810485	0/1	c0001	1401	142	17	29	79	5	11	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	1/0	c0002	1401	119	51	25	21	4	17	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	c0003	1401	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	c0004	1401	1	1	0	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	c0005	1401	1	1	0	0	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP1_chrX_154773684_154810485	0/0	c0006	1402	1	0	0	1	0	0	copy fasta	MPP1	chrX	154773684	154810485
MPP2_chr17_43870360_43912536	0/1	c0001	1659	230	54	58	76	12	29	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0002	1659	30	27	3	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	1/0	c0003	1659	17	4	5	0	4	3	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0004	1659	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0005	1659	2	2	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0006	1659	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0007	1659	1	0	0	1	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0008	1659	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0009	1659	1	0	0	1	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP2_chr17_43870360_43912536	0/0	c0010	1659	1	1	0	0	0	0	copy fasta	MPP2	chr17	43870360	43912536
MPP3_chr17_43795811_43838146	1/1	c0001	1758	272	88	58	87	5	32	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0002	1758	23	0	12	0	5	6	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0003	1758	17	0	0	16	0	1	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0004	1758	12	0	4	4	0	4	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0005	1758	2	0	0	2	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0006	1758	2	0	2	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0007	1758	1	0	0	1	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0008	1758	1	1	0	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0009	1758	1	0	0	0	0	1	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	c0010	1758	1	1	0	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP4_chr2_201639874_201703644	0/1	c0001	1914	274	47	68	105	14	39	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	c0002	1914	91	19	1	71	0	0	copy fasta	MPP4	chr2	201639874	201703644