JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKS4B_chr16_21228699_21258850	0/0	c0012	1254	1	1	0	0	0	0	copy fasta	ANKS4B	chr16	21228699	21258850
ANKS6_chr9_98727009_98801555	0/0	c0001	2616	161	61	33	49	3	15	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/1	c0002	2616	52	2	9	30	3	7	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0003	2616	49	7	6	26	3	7	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	1/0	c0004	2616	48	2	12	26	1	6	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0005	2616	11	0	0	11	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0006	2616	4	0	0	4	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0007	2616	4	1	0	3	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0008	2616	4	0	0	4	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0009	2616	3	3	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0010	2616	2	0	0	2	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0011	2616	2	1	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0012	2616	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0013	2616	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0014	2616	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0015	2616	1	1	0	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0016	2616	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0017	2616	1	0	0	1	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0018	2616	1	0	0	0	0	1	copy fasta	ANKS6	chr9	98727009	98801555
ANKS6_chr9_98727009_98801555	0/0	c0019	2616	1	0	1	0	0	0	copy fasta	ANKS6	chr9	98727009	98801555
ANKUB1_chr3_149756100_149797554	1/1	c0001	1635	130	14	23	67	8	16	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0002	1635	55	2	9	31	2	11	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0003	1635	45	10	6	24	0	5	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0004	1635	35	24	7	3	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0005	1635	30	15	11	0	2	2	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0006	1635	22	2	0	20	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0007	1635	19	9	3	4	0	3	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0008	1635	6	6	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0009	1635	4	3	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0010	1635	3	3	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0011	1635	3	1	2	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0012	1635	2	0	2	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0013	1635	2	0	0	1	1	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0014	1635	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0015	1635	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0016	1635	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0017	1635	1	0	0	0	1	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0018	1635	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0019	1635	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0020	1635	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0021	1635	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0022	1635	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0023	1635	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0024	1635	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0025	1635	1	0	0	0	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0026	1635	1	0	0	1	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0027	1635	1	0	0	0	0	1	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0028	1635	1	0	1	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKUB1_chr3_149756100_149797554	0/0	c0029	1635	1	1	0	0	0	0	copy fasta	ANKUB1	chr3	149756100	149797554
ANKZF1_chr2_219224806_219241679	1/1	c0001	2181	253	58	56	95	13	29	copy fasta	ANKZF1	chr2	219224806	219241679