JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPPED1_chr22_43407014_43512848	0/0	c0003	981	16	14	2	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0004	981	12	6	0	4	0	2	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0005	981	9	1	0	5	0	3	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0006	981	9	7	2	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0007	981	7	6	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0008	981	3	1	1	0	1	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0009	981	3	2	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0010	981	2	0	0	0	0	2	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0011	981	1	0	0	1	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0012	981	1	0	0	0	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	c0013	981	1	0	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED2_chr11_30405224_30591353	1/1	c0001	885	260	74	47	100	8	29	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	c0002	885	1	0	0	0	0	1	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	c0003	885	1	0	1	0	0	0	copy fasta	MPPED2	chr11	30405224	30591353
MPRIP_chr17_17037457_17197643	0/1	c0001	7275	79	4	17	42	4	11	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0002	7275	55	19	1	23	1	11	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	1/0	c0003	7278	47	23	14	3	2	4	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0004	7272	24	1	0	19	0	4	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0005	7275	20	20	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0006	7275	16	1	3	12	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0007	7275	10	0	7	0	2	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0008	7275	6	0	6	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0009	7278	5	0	4	0	1	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0010	7275	5	3	2	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0011	7275	4	0	2	2	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0012	7272	4	0	0	4	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0013	7275	3	0	0	3	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0014	7275	3	3	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0015	7275	3	0	3	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0016	7275	2	2	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0017	7278	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0018	7278	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0019	7278	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0020	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0021	7275	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0022	7275	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0023	7275	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0024	7275	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0025	7275	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0026	7275	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0027	7275	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0028	7275	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0029	7275	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0030	7275	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0031	7275	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0032	7275	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0033	7275	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0034	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0035	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0036	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643