JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPRIP_chr17_17037457_17197643	0/0	c0037	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0038	7275	1	0	1	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0039	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0040	7275	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0041	7266	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0042	7263	1	0	0	1	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0043	7275	1	1	0	0	0	0	copy fasta	MPRIP	chr17	17037457	17197643
MPRIP_chr17_17037457_17197643	0/0	c0044	7272	1	0	0	0	0	1	copy fasta	MPRIP	chr17	17037457	17197643
MPST_chr22_37014742_37034815	1/1	c0001	954	374	94	69	154	18	37	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0002	954	3	3	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0003	954	1	0	1	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0004	954	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0005	954	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0006	954	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0007	954	1	0	0	1	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0008	954	1	1	0	0	0	0	copy fasta	MPST	chr22	37014742	37034815
MPST_chr22_37014742_37034815	0/0	c0009	954	1	0	0	0	0	1	copy fasta	MPST	chr22	37014742	37034815
MPV17L2_chr19_18188218_18201948	1/0	c0001	621	288	67	52	123	12	33	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/1	c0002	621	64	24	14	17	3	5	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0003	621	20	6	8	0	1	5	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0004	621	2	0	0	0	0	2	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0005	621	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0006	621	1	1	0	0	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0007	621	1	0	0	0	0	1	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L2_chr19_18188218_18201948	0/0	c0008	621	1	0	0	1	0	0	copy fasta	MPV17L2	chr19	18188218	18201948
MPV17L_chr16_15390754_15418271	0/1	c0001	591	432	96	78	189	18	50	copy fasta	MPV17L	chr16	15390754	15418271
MPV17L_chr16_15390754_15418271	0/0	c0002	591	1	0	0	1	0	0	copy fasta	MPV17L	chr16	15390754	15418271
MPV17_chr2_27304492_27328097	1/1	c0001	531	299	83	66	102	12	34	copy fasta	MPV17	chr2	27304492	27328097
MPV17_chr2_27304492_27328097	0/0	c0002	531	3	3	0	0	0	0	copy fasta	MPV17	chr2	27304492	27328097
MPZL1_chr1_167716982_167796919	1/1	c0001	810	376	92	67	161	14	40	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	c0002	810	1	0	1	0	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL1_chr1_167716982_167796919	0/0	c0003	810	1	0	0	1	0	0	copy fasta	MPZL1	chr1	167716982	167796919
MPZL2_chr11_118248416_118269297	1/1	c0001	648	385	75	67	185	18	38	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0002	648	18	16	2	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0003	648	5	0	0	5	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0004	648	2	0	0	2	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0005	648	1	0	0	0	0	1	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0006	648	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0007	648	1	1	0	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0008	648	1	0	0	0	0	1	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0009	648	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL2_chr11_118248416_118269297	0/0	c0010	648	1	0	1	0	0	0	copy fasta	MPZL2	chr11	118248416	118269297
MPZL3_chr11_118221690_118257365	0/1	c0001	708	262	56	49	114	12	30	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	1/0	c0002	708	94	2	20	55	6	10	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	c0003	708	18	18	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	c0004	708	15	13	2	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	c0005	708	6	1	0	5	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	c0006	708	2	2	0	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZL3_chr11_118221690_118257365	0/0	c0007	708	1	0	1	0	0	0	copy fasta	MPZL3	chr11	118221690	118257365
MPZ_chr1_161299735_161314968	1/1	c0001	747	386	97	84	147	18	38	copy fasta	MPZ	chr1	161299735	161314968