JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MPZ_chr1_161299735_161314968	0/0	c0002	747	55	0	0	47	0	8	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	c0003	747	2	0	2	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MPZ_chr1_161299735_161314968	0/0	c0004	747	1	1	0	0	0	0	copy fasta	MPZ	chr1	161299735	161314968
MR1_chr1_181028983_181066938	1/1	c0001	1026	282	70	47	119	14	30	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0002	1026	112	11	23	70	2	6	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0003	1026	7	7	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0004	1026	7	3	2	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0005	1026	4	0	2	1	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0006	1026	3	0	3	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0007	1026	2	0	0	2	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0008	1026	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0009	1026	1	1	0	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0010	1026	1	0	0	0	0	1	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0011	1026	1	0	0	1	0	0	copy fasta	MR1	chr1	181028983	181066938
MR1_chr1_181028983_181066938	0/0	c0012	1026	1	0	1	0	0	0	copy fasta	MR1	chr1	181028983	181066938
MRAP2_chr6_84028772_84095881	1/1	c0001	618	140	23	26	63	6	20	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	c0002	618	71	56	11	0	1	3	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	c0003	618	59	8	9	31	3	8	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	c0004	618	1	1	0	0	0	0	copy fasta	MRAP2	chr6	84028772	84095881
MRAP2_chr6_84028772_84095881	0/0	c0005	618	1	0	0	0	0	1	copy fasta	MRAP2	chr6	84028772	84095881
MRAP_chr21_32293855_32317290	1/1	c0001	519	386	75	77	174	14	44	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0002	519	21	0	0	20	0	1	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0003	519	10	9	1	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0004	519	9	9	0	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0005	519	4	3	1	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0006	519	3	2	1	0	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0007	519	1	0	0	0	0	1	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0008	519	1	0	0	1	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAP_chr21_32293855_32317290	0/0	c0009	519	1	0	0	1	0	0	copy fasta	MRAP	chr21	32293855	32317290
MRAS_chr3_138343579_138410533	1/1	c0001	627	264	75	50	99	8	30	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	c0002	627	12	12	0	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	c0003	627	4	0	0	0	0	4	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	c0004	627	3	1	2	0	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRAS_chr3_138343579_138410533	0/0	c0005	627	1	0	0	1	0	0	copy fasta	MRAS	chr3	138343579	138410533
MRC1_chr10_17804348_17916164	0/0	c0001	4371	67	8	15	33	1	10	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0002	4371	47	7	7	28	2	3	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0003	4371	29	11	9	4	3	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0004	4371	16	2	1	11	2	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0005	4371	12	0	6	6	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0006	4371	9	3	0	6	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0007	4371	8	0	4	0	2	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0008	4371	8	0	0	8	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0009	4371	8	0	0	8	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0010	4371	7	0	3	2	1	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0011	4371	6	6	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0012	4371	6	0	0	6	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0013	4371	4	2	1	0	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0014	4371	4	2	0	2	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0015	4371	4	4	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0016	4371	4	4	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164