JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRC1_chr10_17804348_17916164	0/0	c0017	4371	4	3	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0018	4371	4	4	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/1	c0019	4371	4	0	2	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0020	4371	3	0	0	1	0	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0021	4371	3	0	0	0	1	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0022	4371	3	0	0	2	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0023	4371	3	0	2	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0024	4371	3	1	2	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0025	4371	3	0	0	2	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0026	4371	3	0	0	1	0	2	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0027	4371	3	3	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0028	4371	2	0	0	1	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0029	4371	2	0	0	1	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0030	4371	2	1	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0031	4371	2	2	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0032	4371	2	2	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0033	4371	2	2	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0034	4371	2	0	1	0	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	1/0	c0035	4371	2	0	0	0	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0036	4371	2	0	0	2	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0037	4371	2	1	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0038	4371	2	0	0	1	1	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0039	4371	2	0	2	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0040	4371	2	0	1	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0041	4371	2	0	0	2	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0042	4371	2	0	0	2	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0043	4371	2	1	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0044	4371	2	2	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0045	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0046	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0047	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0048	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0049	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0050	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0051	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0052	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0053	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0054	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0055	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0056	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0057	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0058	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0059	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0060	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0061	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0062	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0063	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0064	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0065	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0066	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164