JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRC1_chr10_17804348_17916164	0/0	c0067	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0068	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0069	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0070	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0071	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0072	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0073	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0074	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0075	4371	1	0	0	0	0	1	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0076	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0077	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0078	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0079	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0080	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0081	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0082	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0083	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0084	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0085	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0086	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0087	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0088	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0089	4371	1	0	1	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0090	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0091	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0092	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0093	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0094	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0095	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0096	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0097	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0098	4371	1	1	0	0	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC1_chr10_17804348_17916164	0/0	c0099	4371	1	0	0	1	0	0	copy fasta	MRC1	chr10	17804348	17916164
MRC2_chr17_62622670_62698597	0/0	c0001	4440	105	25	28	42	3	7	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0002	4440	76	1	23	37	3	12	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	1/0	c0003	4440	31	23	3	2	0	2	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0004	4440	13	0	3	4	2	4	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0005	4440	8	0	6	1	1	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0006	4440	7	5	1	0	0	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0007	4440	6	6	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0008	4440	6	0	0	6	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0009	4440	6	0	1	3	0	2	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0010	4440	4	4	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/1	c0011	4440	3	1	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0012	4440	3	0	1	0	1	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0013	4440	3	0	0	3	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0014	4440	3	3	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0015	4440	3	3	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0016	4440	3	0	0	3	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0017	4440	2	2	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597