JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRC2_chr17_62622670_62698597	0/0	c0018	4440	2	2	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0019	4440	2	0	0	2	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0020	4440	2	1	0	0	0	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0021	4440	2	0	0	2	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0022	4440	2	0	0	2	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0023	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0024	4440	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0025	4440	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0026	4440	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0027	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0028	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0029	4420	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0030	4440	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0031	4440	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0032	4440	1	0	0	0	0	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0033	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0034	4440	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0035	4440	1	1	0	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0036	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0037	4440	1	0	1	0	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0038	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0039	4440	1	0	0	0	0	1	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0040	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0041	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRC2_chr17_62622670_62698597	0/0	c0042	4440	1	0	0	1	0	0	copy fasta	MRC2	chr17	62622670	62698597
MRE11_chr11_94410570_94498844	1/1	c0001	2127	374	71	59	190	12	40	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0002	2127	5	4	1	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0003	2127	4	0	0	4	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0004	2127	3	3	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0005	2127	3	3	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0006	2127	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0007	2127	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0008	2127	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0009	2127	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MRE11_chr11_94410570_94498844	0/0	c0010	2127	1	1	0	0	0	0	copy fasta	MRE11	chr11	94410570	94498844
MREG_chr2_215937584_216018551	0/0	c0001	645	275	60	47	125	12	31	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	1/1	c0002	645	136	23	26	63	6	16	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	c0003	645	3	2	1	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	c0004	645	1	0	0	0	0	1	copy fasta	MREG	chr2	215937584	216018551
MREG_chr2_215937584_216018551	0/0	c0005	645	1	1	0	0	0	0	copy fasta	MREG	chr2	215937584	216018551
MRFAP1L1_chr4_6702701_6714865	1/1	c0001	384	454	100	76	214	14	48	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	c0002	384	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1L1_chr4_6702701_6714865	0/0	c0003	384	1	0	0	1	0	0	copy fasta	MRFAP1L1	chr4	6702701	6714865
MRFAP1_chr4_6635685_6647729	1/1	c0001	384	425	92	75	192	18	46	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	c0002	384	3	0	1	0	0	2	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	c0003	384	1	0	0	1	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRFAP1_chr4_6635685_6647729	0/0	c0004	384	1	0	0	1	0	0	copy fasta	MRFAP1	chr4	6635685	6647729
MRGBP_chr20_62791473_62806729	1/1	c0001	615	406	99	74	171	18	42	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	c0002	615	2	1	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGBP_chr20_62791473_62806729	0/0	c0003	615	1	0	1	0	0	0	copy fasta	MRGBP	chr20	62791473	62806729