JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRGBP_chr20_62791473_62806729	0/0	c0004	615	1	0	0	1	0	0	copy fasta	MRGBP	chr20	62791473	62806729
MRGPRD_chr11_68975021_68985986	0/1	c0001	966	238	74	45	91	12	15	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	1/0	c0002	966	174	14	26	104	2	27	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0003	966	3	0	0	3	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0004	966	2	2	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0005	966	2	0	0	2	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0006	966	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0007	966	1	0	1	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0008	966	1	0	0	1	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0009	966	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0010	966	1	0	1	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0011	966	1	0	1	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0012	966	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0013	966	1	0	0	1	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRD_chr11_68975021_68985986	0/0	c0014	966	1	1	0	0	0	0	copy fasta	MRGPRD	chr11	68975021	68985986
MRGPRE_chr11_3220030_3237417	1/0	c0001	939	157	45	24	74	2	11	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/1	c0002	939	127	4	16	81	10	15	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0003	939	77	17	24	18	3	15	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0004	939	45	1	7	32	1	4	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0005	939	13	12	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0006	939	6	6	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0007	939	5	0	4	0	1	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0008	939	3	0	0	3	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0009	939	3	2	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0010	939	2	1	0	0	1	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0011	939	2	1	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0012	939	1	0	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0013	939	1	0	0	0	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0014	939	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0015	939	1	0	0	0	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0016	939	1	0	0	0	0	1	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0017	939	1	0	0	1	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0018	939	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0019	939	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0020	939	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0021	939	1	0	1	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0022	939	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRE_chr11_3220030_3237417	0/0	c0023	939	1	1	0	0	0	0	copy fasta	MRGPRE	chr11	3220030	3237417
MRGPRF_chr11_68999398_69018246	1/1	c0001	1032	185	39	31	90	7	16	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0002	1032	129	24	21	65	3	16	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0003	1032	102	20	24	45	2	11	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0004	1032	5	5	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0005	1032	4	4	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0006	1032	3	0	0	2	0	1	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0007	1032	2	2	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0011	1032	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0012	1032	1	1	0	0	0	0	copy fasta	MRGPRF	chr11	68999398	69018246