JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRGPRF_chr11_68999398_69018246	0/0	c0013	1032	1	0	0	0	0	1	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0014	1032	1	0	0	0	0	1	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRF_chr11_68999398_69018246	0/0	c0015	1032	1	0	0	1	0	0	copy fasta	MRGPRF	chr11	68999398	69018246
MRGPRG_chr11_3212944_3223813	0/0	c0000	0	9	1	4	1	1	2	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	1/1	c0001	870	377	64	74	178	14	45	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0002	870	13	11	2	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0003	870	11	10	1	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0004	870	7	6	1	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0005	870	3	3	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0006	870	2	1	0	0	1	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0007	870	1	0	0	1	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0008	870	1	0	0	0	0	1	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0009	870	1	1	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRG_chr11_3212944_3223813	0/0	c0010	870	1	1	0	0	0	0	copy fasta	MRGPRG	chr11	3212944	3223813
MRGPRX1_chr11_18928499_18944414	0/0	c0001	969	138	42	24	52	6	14	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0002	969	112	19	27	52	3	11	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0003	969	64	9	4	40	2	9	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0004	969	51	1	5	38	4	3	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0005	969	45	7	11	21	1	5	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0006	969	4	0	0	4	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0007	969	4	4	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0008	969	4	4	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0009	969	2	0	0	0	0	2	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0010	23116	2	0	2	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0011	969	2	2	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0012	969	1	0	0	1	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0013	969	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0014	969	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0015	23116	1	0	1	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0016	969	1	1	0	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0017	23114	1	0	0	0	0	1	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0018	969	1	0	1	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0019	969	1	0	1	0	0	0	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0020	970	1	0	0	0	0	1	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX1_chr11_18928499_18944414	0/0	c0021	969	1	0	0	0	0	1	copy fasta	MRGPRX1	chr11	18928499	18944414
MRGPRX2_chr11_19049455_19065717	1/1	c0001	993	309	50	56	156	10	35	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0002	993	89	35	19	23	5	7	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0003	993	51	14	2	29	3	3	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0004	993	5	0	0	5	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0005	993	1	0	0	1	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0006	993	1	0	1	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0007	993	1	1	0	0	0	0	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX2_chr11_19049455_19065717	0/0	c0008	993	1	0	0	0	0	1	copy fasta	MRGPRX2	chr11	19049455	19065717
MRGPRX3_chr11_18127571_18143488	0/0	c0001	969	265	6	49	176	8	26	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/1	c0002	969	48	7	10	19	2	9	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0003	969	26	24	0	2	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0004	969	20	7	4	2	3	4	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	1/0	c0005	969	15	14	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0006	969	14	11	3	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0007	969	13	1	8	2	1	1	copy fasta	MRGPRX3	chr11	18127571	18143488