JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRGPRX3_chr11_18127571_18143488	0/0	c0008	969	10	10	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0009	969	9	9	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0010	969	6	4	2	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0011	969	3	0	0	2	0	1	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0012	969	3	1	2	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0013	969	2	2	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0014	969	2	0	0	2	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0015	969	1	1	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0016	969	1	1	0	0	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0017	969	1	0	0	0	0	1	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX3_chr11_18127571_18143488	0/0	c0018	969	1	0	0	1	0	0	copy fasta	MRGPRX3	chr11	18127571	18143488
MRGPRX4_chr11_18167837_18179280	0/0	c0001	969	140	18	16	88	7	11	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0002	969	120	6	27	70	4	13	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0003	969	52	22	15	5	1	9	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/1	c0004	969	38	7	6	11	2	11	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0005	969	12	11	1	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	1/0	c0006	969	10	9	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0007	969	9	9	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0008	969	7	5	2	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0009	969	6	6	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0010	969	1	0	0	1	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0011	969	1	0	0	1	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0012	969	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0013	969	1	0	1	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0014	969	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRGPRX4_chr11_18167837_18179280	0/0	c0015	969	1	1	0	0	0	0	copy fasta	MRGPRX4	chr11	18167837	18179280
MRI1_chr19_13759522_13779282	1/1	c0001	1110	426	65	84	210	16	49	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0002	1110	10	10	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0003	1110	7	7	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0004	1110	5	5	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0005	1110	2	2	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0006	1110	2	2	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0007	1110	1	0	0	0	0	1	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0008	1110	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0009	1110	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0010	1110	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0011	1110	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0012	1110	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0013	1110	1	0	0	1	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRI1_chr19_13759522_13779282	0/0	c0014	1110	1	1	0	0	0	0	copy fasta	MRI1	chr19	13759522	13779282
MRLN_chr10_59731692_59758455	1/1	c0001	141	417	94	72	193	16	40	copy fasta	MRLN	chr10	59731692	59758455
MRLN_chr10_59731692_59758455	0/0	c0002	141	1	0	0	1	0	0	copy fasta	MRLN	chr10	59731692	59758455
MRM1_chr17_36596583_36613964	0/1	c0001	1062	351	81	68	148	12	41	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0002	1062	32	0	5	22	2	3	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0003	1062	2	0	0	2	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0004	1062	2	2	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0005	1062	2	2	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0006	1062	1	0	1	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0008	1062	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964