Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB6_chr2_219204772_219223958	0/0	c0005	2529	2	0	0	2	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/1	c0006	2529	2	0	0	0	1	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0007	2529	2	0	2	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0008	2529	1	0	0	0	0	1	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0009	2529	1	0	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0010	2529	1	0	0	0	1	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0011	2529	1	0	0	0	0	1	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0012	2529	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0013	2529	1	0	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0014	2529	1	1	0	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0015	2529	1	0	0	0	0	1	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0016	2529	1	1	0	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	c0017	2529	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB7_chrX_75046048_75161283	1/1	c0001	2259	201	44	40	78	7	30	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0002	2259	17	15	2	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0003	2259	9	9	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0004	2259	1	0	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0005	2259	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0006	2259	1	0	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0007	2261	1	0	0	1	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	c0008	2259	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB8_chr7_151023450_151052782	1/0	c0001	2157	229	37	47	107	8	29	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/1	c0002	2157	87	12	11	43	7	13	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0003	2157	18	11	0	7	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0004	2157	12	3	3	3	2	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0005	2157	9	1	3	2	1	2	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0006	2157	8	7	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0007	2157	7	6	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0008	2157	6	6	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0009	2157	4	4	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0010	2157	3	0	3	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0011	2157	2	2	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0012	2157	2	0	0	2	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0013	2157	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0014	2157	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0015	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0016	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0017	2157	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0018	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0019	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0020	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0021	2157	1	0	0	0	0	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0022	2157	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0023	2157	1	0	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0024	2157	1	0	0	1	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	c0025	2157	1	1	0	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB9_chr12_122923992_122971463	1/1	c0001	2301	252	74	54	84	6	32	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0002	2301	6	0	0	6	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0003	2301	2	2	0	0	0	0	copy fasta	ABCB9	chr12	122923992	122971463
ABCB9_chr12_122923992_122971463	0/0	c0004	2301	2	0	0	2	0	0	copy fasta	ABCB9	chr12	122923992	122971463