JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKZF1_chr2_219224806_219241679	0/0	c0002	2181	37	7	7	12	2	9	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0003	2181	34	13	0	19	0	2	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0004	2181	18	0	12	6	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0005	2181	6	0	0	6	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0006	2181	3	0	0	3	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0007	2181	3	0	2	0	1	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0008	2181	3	3	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0009	2181	3	3	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0010	2181	2	0	0	2	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0011	2181	2	0	2	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0012	2181	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0013	2181	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0014	2181	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0015	2181	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0016	2181	1	0	1	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0017	2181	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0018	2181	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0019	2181	1	0	0	1	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0020	2181	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0021	2181	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0022	2181	1	1	0	0	0	0	copy fasta	ANKZF1	chr2	219224806	219241679
ANKZF1_chr2_219224806_219241679	0/0	c0023	2181	1	0	0	0	0	1	copy fasta	ANKZF1	chr2	219224806	219241679
ANLN_chr7_36384862_36458791	0/0	c0001	3378	134	15	20	82	3	14	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	1/1	c0002	3375	132	46	23	45	4	12	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0003	3378	42	2	7	23	5	5	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0004	3375	34	6	8	12	2	6	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0005	3375	23	0	3	13	2	5	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0006	3378	10	3	5	0	0	2	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0007	3378	6	5	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0008	3378	4	3	1	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0009	3375	3	0	2	0	0	1	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0010	3378	3	0	0	2	0	1	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0011	3375	2	2	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0012	3375	2	1	1	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0013	3378	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0014	3375	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0015	3378	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0016	3378	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0017	3378	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0018	3375	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0019	3375	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0020	3375	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0021	3375	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0022	3378	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0023	3378	1	1	0	0	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0024	3378	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANLN_chr7_36384862_36458791	0/0	c0025	3378	1	0	0	1	0	0	copy fasta	ANLN	chr7	36384862	36458791
ANO10_chr3_43360848_43627011	0/1	c0001	1983	127	38	36	33	6	13	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	1/0	c0002	1983	67	26	13	13	4	10	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0003	1983	6	6	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011