JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRM1_chr17_36596583_36613964	0/0	c0009	1062	1	0	1	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0010	1062	1	1	0	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM1_chr17_36596583_36613964	0/0	c0011	1062	1	0	1	0	0	0	copy fasta	MRM1	chr17	36596583	36613964
MRM2_chr7_2229195_2247205	1/1	c0001	741	411	83	80	186	14	46	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	c0002	741	11	10	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	c0003	741	4	4	0	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	c0004	741	2	0	0	2	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	c0005	741	1	0	1	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM2_chr7_2229195_2247205	0/0	c0006	741	1	1	0	0	0	0	copy fasta	MRM2	chr7	2229195	2247205
MRM3_chr17_777353_797509	1/0	c0001	1263	233	78	32	88	12	22	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0002	1263	119	8	18	75	2	16	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/1	c0003	1263	59	5	21	19	4	9	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0004	1263	15	0	2	12	0	1	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0005	1263	4	0	4	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0006	1263	2	2	0	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0007	1263	1	0	0	1	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0008	1263	1	0	0	0	0	1	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0009	1263	1	1	0	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0010	1263	1	1	0	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0011	1263	1	0	0	0	0	1	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0012	1263	1	1	0	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0013	1263	1	0	0	1	0	0	copy fasta	MRM3	chr17	777353	797509
MRM3_chr17_777353_797509	0/0	c0014	1263	1	0	1	0	0	0	copy fasta	MRM3	chr17	777353	797509
MRNIP_chr5_179832276_179863817	0/1	c0001	1032	247	15	45	149	3	34	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0002	1032	70	53	9	1	5	2	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0003	1032	50	2	12	26	6	4	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	1/0	c0004	1032	46	3	12	20	2	8	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0005	1032	15	15	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0006	1032	4	4	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0007	1032	3	1	2	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0008	1032	2	0	0	2	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0012	1032	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0013	1032	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0014	1032	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MRNIP_chr5_179832276_179863817	0/0	c0015	1032	1	0	0	1	0	0	copy fasta	MRNIP	chr5	179832276	179863817
MROH1_chr8_144143016_144266926	0/0	c0001	4926	41	8	10	13	2	8	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/1	c0002	4926	39	3	13	16	2	4	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	1/0	c0003	4926	14	12	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0004	4926	11	11	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0005	4926	5	5	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0006	4926	4	3	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0007	4926	4	4	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0008	4926	4	4	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0009	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0010	4926	1	0	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0011	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0012	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926