JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH1_chr8_144143016_144266926	0/0	c0013	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0014	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0015	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0016	4926	1	0	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0017	4926	1	0	1	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0018	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0019	4926	1	0	0	0	0	1	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0020	4926	1	0	0	0	0	1	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0021	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0022	4926	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0023	4926	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0024	4926	1	0	0	1	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0025	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH1_chr8_144143016_144266926	0/0	c0026	4926	1	1	0	0	0	0	copy fasta	MROH1	chr8	144143016	144266926
MROH2A_chr2_233773330_233838418	0/0	c0001	5025	25	1	9	9	0	6	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0002	5025	13	1	2	10	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0003	5025	9	0	0	1	3	5	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0004	5025	8	0	4	2	1	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0005	5025	8	0	0	8	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0006	5025	8	0	0	8	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0007	5025	8	1	2	5	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0008	5025	7	2	0	5	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0009	5025	7	0	0	6	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0010	5025	7	0	1	6	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0011	5025	6	0	0	6	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0012	5025	6	0	6	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0013	5025	6	0	0	4	1	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0014	5025	5	0	1	3	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/1	c0015	5025	5	0	0	4	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0016	5025	5	0	0	5	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0017	5025	5	0	2	3	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0018	5025	4	0	0	4	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0019	5025	4	0	3	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0020	5025	4	0	0	0	0	4	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0021	5025	4	4	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0022	5025	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0023	5025	3	1	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0024	5025	3	0	0	2	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0025	5025	3	0	0	3	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0026	5025	3	0	0	3	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0027	5025	3	1	0	0	1	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0028	5025	3	0	2	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0029	5025	3	0	3	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0030	5025	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0031	5025	3	0	0	0	1	2	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0032	5025	3	3	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0033	5025	3	1	0	2	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0034	5025	2	2	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0035	5025	2	0	1	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0036	5025	2	0	1	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418