JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH2A_chr2_233773330_233838418	0/0	c0137	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0138	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0139	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0140	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0141	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0142	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0143	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0144	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0145	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0146	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0147	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0148	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0149	5025	1	0	0	0	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0150	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0151	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0152	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0153	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0154	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0155	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0156	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0157	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0158	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0159	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0160	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0161	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0162	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0163	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0164	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0165	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0166	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0167	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0168	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0169	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0170	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0171	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0172	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0173	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0174	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0175	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0176	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0177	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0178	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0179	5025	1	0	0	0	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0180	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0181	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0182	5025	1	0	0	0	0	1	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0183	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0184	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0185	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0186	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418