JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH2A_chr2_233773330_233838418	0/0	c0187	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0188	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0189	5025	1	0	1	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0190	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0191	5025	1	0	0	0	1	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	1/0	c0192	5025	1	0	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0193	5025	1	0	0	1	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0194	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0195	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2A_chr2_233773330_233838418	0/0	c0196	5025	1	1	0	0	0	0	copy fasta	MROH2A	chr2	233773330	233838418
MROH2B_chr5_40993020_41076342	0/0	c0001	4758	33	2	9	17	4	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0002	4758	30	1	4	21	2	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0003	4758	30	7	5	17	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/1	c0004	4758	28	1	8	6	2	10	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0005	4758	18	0	1	16	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0006	4758	17	1	2	14	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0007	4758	14	0	1	11	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0008	4758	9	0	2	5	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0009	4758	9	8	0	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0010	4758	8	0	2	5	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0011	4758	8	0	0	8	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0012	4758	7	0	6	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0013	4758	7	2	1	1	0	3	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0014	4758	7	0	3	0	0	4	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0015	4758	7	6	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0016	4758	6	6	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0017	4758	5	0	3	0	1	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0018	4758	5	5	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0019	4758	5	2	1	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0020	4758	5	0	1	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0021	4758	4	0	0	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0022	4758	4	4	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0023	4758	4	0	2	0	0	2	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0024	4758	4	0	0	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0025	4758	4	0	2	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0026	4758	4	0	0	4	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0027	4758	3	0	0	3	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0028	4758	3	0	0	3	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0029	4758	3	3	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0030	4758	3	2	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0031	4758	3	0	1	0	2	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	1/0	c0032	4758	3	2	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0033	4758	3	0	2	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0034	4758	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0035	4758	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0036	4758	2	0	0	2	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0037	4758	2	1	0	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0038	4758	2	0	1	0	1	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0039	4758	2	0	1	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0040	4758	2	2	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342