JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH2B_chr5_40993020_41076342	0/0	c0091	4758	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0092	4758	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0093	4758	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0094	4758	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0095	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0096	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0097	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0098	4758	1	0	1	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0099	4758	1	0	0	0	0	1	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0100	4758	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0101	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0102	4758	1	0	0	1	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0103	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0104	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0105	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH2B_chr5_40993020_41076342	0/0	c0106	4758	1	1	0	0	0	0	copy fasta	MROH2B	chr5	40993020	41076342
MROH6_chr8_143561192_143577772	0/0	c0001	2160	147	18	23	88	4	14	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0002	2160	87	3	24	40	8	12	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/1	c0003	2160	73	26	13	24	0	9	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0004	2161	20	4	4	7	2	3	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0005	2160	12	0	0	12	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0006	2160	9	9	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0007	2161	9	0	5	1	3	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0008	2160	8	8	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0009	2160	6	0	6	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0010	2161	4	1	0	3	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0011	2160	4	0	0	4	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0012	2160	3	3	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0013	2160	3	3	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0014	2160	3	3	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0015	2160	2	2	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0016	2161	2	0	2	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0017	2160	2	1	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0018	2160	2	2	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0019	2160	2	0	0	0	0	2	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0020	2161	2	1	0	0	1	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0021	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0022	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0023	2160	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0024	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0025	2161	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0026	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0027	2161	1	0	0	0	0	1	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0028	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0029	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0030	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0031	2161	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0032	2170	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0033	2161	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0034	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772