JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH6_chr8_143561192_143577772	0/0	c0035	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0036	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0037	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0038	2176	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0039	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0040	2161	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0041	2177	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0042	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0043	2160	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0044	2160	1	0	0	0	0	1	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0045	2161	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0046	2160	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0047	2176	1	1	0	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0048	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0049	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0050	2160	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0051	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0052	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0053	2170	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0054	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0055	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0056	2161	1	0	1	0	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH6_chr8_143561192_143577772	0/0	c0057	2160	1	0	0	1	0	0	copy fasta	MROH6	chr8	143561192	143577772
MROH7_chr1_54636786_54715266	0/0	c0001	3972	58	4	6	43	3	2	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0002	3972	46	10	9	16	2	9	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0003	3972	31	4	6	16	2	3	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0004	3972	15	0	14	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0005	3972	12	0	0	12	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0006	3972	10	0	0	9	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0007	3972	9	1	7	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0008	3972	9	2	0	6	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0009	3972	8	1	0	4	0	3	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0010	3972	8	8	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0011	3972	8	1	3	1	2	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0012	3972	7	4	1	0	1	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0013	3972	7	0	0	6	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0014	3972	6	0	0	5	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0015	3972	6	0	0	4	1	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0016	3972	6	0	1	4	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0017	3972	6	1	0	5	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0018	3972	5	5	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0019	3972	5	0	5	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/1	c0020	3972	4	3	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0021	3972	4	0	0	4	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0022	3972	4	0	0	4	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0023	3972	3	0	0	3	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0024	3972	3	1	0	0	1	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0025	3972	3	3	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0026	3972	3	3	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0027	3972	3	3	0	0	0	0	copy fasta	MROH7	chr1	54636786	54715266