JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANO10_chr3_43360848_43627011	0/0	c0004	1983	5	5	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0005	1983	4	3	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0006	1983	4	3	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0007	1983	3	0	2	0	0	1	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0008	1983	2	1	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0009	1983	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0010	1983	1	0	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0011	1983	1	0	1	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0012	1983	1	0	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0013	1983	1	0	0	1	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO10_chr3_43360848_43627011	0/0	c0014	1983	1	1	0	0	0	0	copy fasta	ANO10	chr3	43360848	43627011
ANO1_chr11_70073317_70194530	0/0	c0001	2961	126	17	29	61	6	13	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	1/1	c0002	2961	45	12	9	13	1	8	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0003	2961	34	9	8	7	4	6	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0004	2961	25	14	7	0	3	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0005	2961	13	1	3	5	2	2	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0006	2961	9	8	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0007	2961	5	4	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0008	2961	5	5	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0009	2961	5	1	3	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0010	2961	4	1	2	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0011	2961	4	4	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0012	2961	3	0	3	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0013	2961	2	0	2	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0014	2961	2	2	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0015	2961	2	0	2	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0016	2961	2	2	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0017	2961	2	1	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0018	2961	2	0	1	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0019	2961	1	0	0	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0020	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0021	2961	1	0	0	0	0	1	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0022	2961	1	0	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0023	2961	1	0	1	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0024	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0025	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0026	2961	1	0	0	1	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0027	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0028	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0029	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO1_chr11_70073317_70194530	0/0	c0030	2961	1	1	0	0	0	0	copy fasta	ANO1	chr11	70073317	70194530
ANO2_chr12_5557655_5950259	1/0	c0001	2997	59	30	14	9	1	4	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/1	c0002	2997	31	3	17	8	1	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0003	2997	16	13	0	2	1	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0004	2997	10	0	2	7	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0005	2997	8	6	2	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0006	2997	5	2	0	0	0	3	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0007	2997	4	1	3	0	0	0	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0008	2997	4	0	2	1	0	1	copy fasta	ANO2	chr12	5557655	5950259
ANO2_chr12_5557655_5950259	0/0	c0009	2997	3	0	1	0	0	2	copy fasta	ANO2	chr12	5557655	5950259