JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
MROH7_chr1_54636786_54715266	0/0	c0078	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0079	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0080	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0081	3972	1	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0082	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0083	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0084	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0085	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0086	3972	1	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0087	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0088	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0089	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0090	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0091	3972	1	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0092	3972	1	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0093	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0094	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0095	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0096	3972	1	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0097	3972	1	0	1	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0098	3972	1	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0099	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0100	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0101	3972	1	0	0	0	1	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0102	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0103	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0104	3972	1	0	0	1	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0105	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH7_chr1_54636786_54715266	0/0	c0106	3972	1	1	0	0	0	copy fasta	MROH7	chr1	54636786	54715266
MROH9_chr1_170930534_171069765	1/1	c0001	2586	92	22	25	36	7	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0002	2586	63	9	18	28	8	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0003	2586	18	17	0	0	1	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0004	2586	7	6	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0005	2586	6	5	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0006	2586	6	0	6	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0007	2586	5	5	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0008	2586	4	4	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0009	2586	3	3	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0010	2586	2	2	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0011	2586	2	0	1	0	1	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0012	2586	2	2	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0013	2586	2	2	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0014	2586	1	0	0	1	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0015	2586	1	0	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0016	2586	1	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0017	2586	1	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0018	2586	1	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0019	2586	1	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0020	2586	1	0	0	0	1	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0021	2586	1	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765