JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MROH9_chr1_170930534_171069765	0/0	c0022	2586	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0023	2586	1	0	0	1	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0024	2586	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0025	2586	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0026	2586	1	1	0	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MROH9_chr1_170930534_171069765	0/0	c0027	2586	1	0	1	0	0	0	copy fasta	MROH9	chr1	170930534	171069765
MRO_chr18_50790130_50825016	1/0	c0001	747	76	34	5	33	2	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0002	747	64	8	17	33	1	5	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0003	747	44	3	13	15	3	10	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0004	747	35	7	4	23	1	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/1	c0005	747	32	0	9	9	7	6	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0006	747	30	13	1	15	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0007	747	26	2	8	13	2	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0008	747	22	1	11	5	0	5	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0009	747	19	1	4	13	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0010	747	19	12	2	5	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0011	747	17	1	2	9	1	4	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0012	747	15	2	4	3	1	5	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0013	747	8	1	0	7	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0014	747	5	0	1	4	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0015	747	3	0	0	3	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0016	747	3	0	0	3	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0017	747	2	1	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0018	747	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0019	747	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0020	747	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0021	747	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0022	747	1	0	0	0	0	1	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0023	747	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0024	747	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0025	747	1	0	0	1	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0026	747	1	0	1	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRO_chr18_50790130_50825016	0/0	c0027	747	1	1	0	0	0	0	copy fasta	MRO	chr18	50790130	50825016
MRPL10_chr17_47818272_47836541	1/1	c0001	786	350	89	66	149	9	35	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	c0002	786	36	7	15	2	5	7	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	c0003	786	2	0	0	2	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	c0004	786	1	0	1	0	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL10_chr17_47818272_47836541	0/0	c0005	786	1	0	0	1	0	0	copy fasta	MRPL10	chr17	47818272	47836541
MRPL11_chr11_66430075_66443848	1/0	c0001	579	292	65	49	145	11	21	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/1	c0002	579	101	17	18	53	5	7	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	c0003	579	7	6	1	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	c0004	579	1	1	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	c0005	579	1	1	0	0	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	c0006	579	1	0	0	1	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL11_chr11_66430075_66443848	0/0	c0007	579	1	0	0	1	0	0	copy fasta	MRPL11	chr11	66430075	66443848
MRPL12_chr17_81698367_81712517	1/1	c0001	597	338	80	73	123	14	46	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	c0002	597	68	5	4	53	2	4	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	c0003	597	2	1	1	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	c0004	597	2	2	0	0	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL12_chr17_81698367_81712517	0/0	c0005	597	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517