JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL12_chr17_81698367_81712517	0/0	c0006	597	1	0	0	1	0	0	copy fasta	MRPL12	chr17	81698367	81712517
MRPL13_chr8_120390437_120450150	1/1	c0001	537	342	88	62	148	6	36	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	c0002	537	3	3	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL13_chr8_120390437_120450150	0/0	c0003	537	1	1	0	0	0	0	copy fasta	MRPL13	chr8	120390437	120450150
MRPL14_chr6_44108451_44132452	0/1	c0001	438	315	67	57	147	13	30	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	1/0	c0002	438	118	20	19	57	5	16	copy fasta	MRPL14	chr6	44108451	44132452
MRPL14_chr6_44108451_44132452	0/0	c0003	438	3	3	0	0	0	0	copy fasta	MRPL14	chr6	44108451	44132452
MRPL15_chr8_54130241_54153514	1/1	c0001	891	386	97	72	168	16	31	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	c0002	891	1	0	0	1	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	c0003	891	1	0	0	1	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	c0004	891	1	0	0	0	0	1	copy fasta	MRPL15	chr8	54130241	54153514
MRPL15_chr8_54130241_54153514	0/0	c0005	891	1	1	0	0	0	0	copy fasta	MRPL15	chr8	54130241	54153514
MRPL16_chr11_59801140_59815778	1/1	c0001	756	291	88	60	104	9	28	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0002	756	16	0	2	14	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0003	756	6	0	0	5	1	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0004	756	2	2	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0005	756	2	0	0	2	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0006	756	1	1	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0007	756	1	1	0	0	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL16_chr11_59801140_59815778	0/0	c0008	756	1	0	0	1	0	0	copy fasta	MRPL16	chr11	59801140	59815778
MRPL17_chr11_6675385_6688340	1/1	c0001	528	411	95	77	175	18	44	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	c0002	528	2	2	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	c0003	528	1	1	0	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	c0004	528	1	0	1	0	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL17_chr11_6675385_6688340	0/0	c0005	528	1	0	0	1	0	0	copy fasta	MRPL17	chr11	6675385	6688340
MRPL18_chr6_159785467_159803429	0/1	c0001	540	264	42	66	114	13	28	copy fasta	MRPL18	chr6	159785467	159803429
MRPL18_chr6_159785467_159803429	1/0	c0002	543	144	46	12	70	3	12	copy fasta	MRPL18	chr6	159785467	159803429
MRPL19_chr2_75641783_75667206	1/1	c0001	879	359	85	59	170	14	29	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	c0002	879	60	1	11	32	3	13	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	c0003	879	8	6	0	0	0	2	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	c0004	879	2	2	0	0	0	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL19_chr2_75641783_75667206	0/0	c0005	879	1	0	0	0	1	0	copy fasta	MRPL19	chr2	75641783	75667206
MRPL1_chr4_77857830_77957785	1/1	c0001	978	283	73	45	130	7	26	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	c0002	978	9	4	2	0	0	3	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	c0003	978	5	1	1	0	1	2	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	c0004	978	3	0	0	3	0	0	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	c0005	978	1	0	0	0	0	1	copy fasta	MRPL1	chr4	77857830	77957785
MRPL1_chr4_77857830_77957785	0/0	c0006	978	1	0	0	1	0	0	copy fasta	MRPL1	chr4	77857830	77957785
MRPL20_chr1_1396909_1412293	1/1	c0001	450	352	95	58	137	16	44	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	c0002	450	1	0	0	1	0	0	copy fasta	MRPL20	chr1	1396909	1412293
MRPL20_chr1_1396909_1412293	0/0	c0003	450	1	1	0	0	0	0	copy fasta	MRPL20	chr1	1396909	1412293
MRPL21_chr11_68886278_68908832	1/0	c0001	618	380	77	61	178	18	45	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0002	618	8	7	1	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0003	618	2	1	1	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0004	618	2	2	0	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0005	618	1	0	0	0	0	1	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0006	618	1	1	0	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL21_chr11_68886278_68908832	0/0	c0007	618	1	0	1	0	0	0	copy fasta	MRPL21	chr11	68886278	68908832
MRPL22_chr5_154936073_154974411	1/1	c0001	621	275	73	45	119	10	26	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0002	621	41	9	9	13	2	8	copy fasta	MRPL22	chr5	154936073	154974411