JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL22_chr5_154936073_154974411	0/0	c0003	621	17	0	1	14	0	2	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0004	621	11	2	5	0	2	2	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0005	621	5	0	4	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0006	621	2	2	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0007	621	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0008	621	1	0	1	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0009	621	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0010	621	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0011	621	1	0	1	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0012	621	1	0	0	1	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL22_chr5_154936073_154974411	0/0	c0013	621	1	1	0	0	0	0	copy fasta	MRPL22	chr5	154936073	154974411
MRPL23_chr11_1942332_1961600	0/1	c0001	462	270	85	57	81	16	30	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0002	462	53	2	16	27	0	8	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0003	462	39	6	2	26	0	5	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0004	462	34	0	1	32	0	1	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0005	462	1	1	0	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0006	418	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0007	462	1	0	1	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0008	462	1	0	0	1	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL23_chr11_1942332_1961600	0/0	c0009	462	1	0	1	0	0	0	copy fasta	MRPL23	chr11	1942332	1961600
MRPL24_chr1_156732303_156746088	1/1	c0001	651	353	86	76	128	15	46	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	c0002	651	6	6	0	0	0	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	c0003	651	3	0	2	0	1	0	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	c0004	651	1	0	0	0	0	1	copy fasta	MRPL24	chr1	156732303	156746088
MRPL24_chr1_156732303_156746088	0/0	c0005	651	1	0	0	0	0	1	copy fasta	MRPL24	chr1	156732303	156746088
MRPL27_chr17_50362867_50378184	1/1	c0001	447	341	63	74	142	16	44	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0002	447	16	16	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0003	447	7	5	1	0	0	1	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0004	447	2	1	1	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0005	447	2	2	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0006	447	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0007	447	1	0	0	0	0	1	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0008	447	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL27_chr17_50362867_50378184	0/0	c0009	447	1	1	0	0	0	0	copy fasta	MRPL27	chr17	50362867	50378184
MRPL28_chr16_361969_375538	0/0	c0001	771	181	50	35	64	7	25	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	1/1	c0002	771	129	14	26	69	4	14	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0003	771	27	0	3	15	4	5	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0004	771	17	16	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0005	771	8	0	4	0	1	3	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0006	771	8	0	2	5	0	1	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0007	771	6	2	1	3	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0008	771	4	4	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0009	771	3	3	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0010	771	3	3	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0011	771	2	1	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0012	771	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0013	771	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0014	745	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0015	759	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL28_chr16_361969_375538	0/0	c0016	771	1	0	1	0	0	0	copy fasta	MRPL28	chr16	361969	375538