JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MRPL28_chr16_361969_375538	0/0	c0017	771	1	1	0	0	0	0	copy fasta	MRPL28	chr16	361969	375538
MRPL2_chr6_43049029_43064434	1/1	c0001	918	296	87	56	112	10	29	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	c0002	918	1	0	0	0	0	1	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	c0003	918	1	1	0	0	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	c0004	918	1	0	0	1	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL2_chr6_43049029_43064434	0/0	c0005	918	1	0	0	1	0	0	copy fasta	MRPL2	chr6	43049029	43064434
MRPL30_chr2_99176184_99204561	0/0	c0001	486	238	41	45	130	4	18	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/1	c0002	486	76	17	25	23	2	8	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	1/0	c0003	486	62	28	5	11	3	14	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	c0004	486	9	5	3	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	c0005	486	2	2	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	c0006	486	1	0	0	0	1	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	c0007	486	1	0	0	1	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL30_chr2_99176184_99204561	0/0	c0008	486	1	1	0	0	0	0	copy fasta	MRPL30	chr2	99176184	99204561
MRPL32_chr7_42927376_42942857	0/1	c0001	567	320	72	57	139	12	39	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	1/0	c0002	567	68	19	21	16	4	7	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	c0003	567	5	5	0	0	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL32_chr7_42927376_42942857	0/0	c0004	567	1	0	0	1	0	0	copy fasta	MRPL32	chr7	42927376	42942857
MRPL33_chr2_27766719_27784733	1/1	c0001	198	393	90	61	188	14	38	copy fasta	MRPL33	chr2	27766719	27784733
MRPL33_chr2_27766719_27784733	0/0	c0002	198	1	0	1	0	0	0	copy fasta	MRPL33	chr2	27766719	27784733
MRPL34_chr19_17300872_17311843	1/1	c0001	279	371	90	75	148	14	42	copy fasta	MRPL34	chr19	17300872	17311843
MRPL34_chr19_17300872_17311843	0/0	c0002	279	11	4	3	0	4	0	copy fasta	MRPL34	chr19	17300872	17311843
MRPL35_chr2_86194457_86218790	1/0	c0001	567	341	86	49	171	6	28	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/1	c0002	567	75	6	24	27	8	9	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	c0003	567	6	0	0	6	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	c0004	567	1	0	0	0	0	1	copy fasta	MRPL35	chr2	86194457	86218790
MRPL35_chr2_86194457_86218790	0/0	c0005	567	1	0	1	0	0	0	copy fasta	MRPL35	chr2	86194457	86218790
MRPL36_chr5_1793385_1804837	1/1	c0001	312	428	93	80	187	18	48	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	c0002	312	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	c0003	312	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	c0004	312	1	1	0	0	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL36_chr5_1793385_1804837	0/0	c0005	312	1	0	0	1	0	0	copy fasta	MRPL36	chr5	1793385	1804837
MRPL37_chr1_54195167_54223383	0/0	c0001	1272	187	26	32	100	4	25	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/1	c0002	1272	161	54	44	33	8	21	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0003	1272	62	0	4	57	0	1	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0004	1272	7	6	1	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	1/0	c0005	1272	4	2	1	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0006	1272	3	3	0	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0007	1272	2	2	0	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0008	1272	2	0	2	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0010	1272	1	1	0	0	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0011	1272	1	0	0	1	0	0	copy fasta	MRPL37	chr1	54195167	54223383
MRPL37_chr1_54195167_54223383	0/0	c0012	1272	1	0	0	0	0	1	copy fasta	MRPL37	chr1	54195167	54223383
MRPL38_chr17_75893644_75909884	1/1	c0001	1143	169	18	35	82	9	23	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0002	1143	151	65	21	48	7	10	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0003	1143	16	11	0	4	0	1	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0004	1143	4	0	2	0	0	2	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0005	1143	2	0	0	2	0	0	copy fasta	MRPL38	chr17	75893644	75909884
MRPL38_chr17_75893644_75909884	0/0	c0006	1143	2	0	0	2	0	0	copy fasta	MRPL38	chr17	75893644	75909884